Andrew Brass

Bramhall, M., Rich, K., Chakraborty, A., Logunova, L., Han, N., Wilson, J., Mclaughlin, J., Brass, A. & Cruickshank, S., 16 Dec 2019, In: Inflammatory Bowel Diseases. 26, 3, p. 360-368 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Gut eosinophils and their impact on the mucus-resident microbiota

Singh, G., Brass, A., Knight, C. & Cruickshank, S., 2019, In: Immunology.

Research output: Contribution to journal › Article › peer-review

Open Access

Problem-based learning in clinical bioinformatics education: Does it help to create communities of practice?

Davies, A., Harris, D., Banks Gatenby, A. & Brass, A., 27 Jun 2019, In:  PLoS Computational Biology. 15, 6

Research output: Contribution to journal › Article › peer-review

Open Access

2018

Britain Breathing: Using the Experience Sampling Method to Collect the Seasonal Allergy Symptoms of a Country

Vigo, M., Hassan, L., Vance, W., Jay, C., Brass, A. & Cruickshank, S., 1 Jan 2018, In: Journal of the American Medical Informatics Association. 25, 1, p. 88-92 4 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Data Journeys: Identifying Social and Technical Barriers to Data Movement in Large, Complex Organisations

Eleftheriou, I., Embury, S., Moden, R., Dobinson, P. & Brass, A., 1 Feb 2018, In: Journal of Biomedical Informatics. 78, 0, p. 102-122

Research output: Contribution to journal › Article › peer-review

Open Access

File

308 Downloads (Pure)

2017

Compositional changes in the gut mucus microbiota precede the onset of colitis-induced inflammation

Glymenaki, M., Singh, G., Brass, A., Warhurst, G., Mcbain, A., Else, K. & Cruickshank, S., 30 Jun 2017, In: Inflammatory Bowel Diseases. 23, 6, p. 912-922

Research output: Contribution to journal › Article › peer-review

Open Access

File

99 Downloads (Pure)

TIGERi: Modeling and visualizing the responses to perturbation of a transcription factor network

Han, N., Noyes, H. A. & Brass, A., 31 May 2017, In: BMC Bioinformatics. 18, 260.

Research output: Contribution to journal › Article › peer-review

Open Access

2016

Bias in the reporting of sex and age in biomedical research on mouse models

Florez Vargas, O., FlÃ³rez-Vargas, O., Brass, A., Karystianis, G., Bramhall, M., Stevens, R., Cruickshank, S. & Nenadic, G., 3 Mar 2016, In: eLife. 5, 0, e13615.

Research output: Contribution to journal › Article › peer-review

Open Access

File

102 Downloads (Pure)

Glucocorticoid receptor isoforms direct distinct mitochondrial programs to regulate ATP production

Morgan, D., Poolman, T., Williamson, A., Wang, Z., Clark, N. R., Ma’ayan, A., Whetton, A., Brass, A., Matthews, L. & Ray, D., 26 May 2016, In: Scientific Reports.

Research output: Contribution to journal › Article › peer-review

Open Access

Statistical mechanics of ontology based annotations

Hoyle, D. & Brass, A., 15 Jan 2016, In: Physica A: Statistical Mechanics and its Applications. 442, p. 284-299 15 p.

Research output: Contribution to journal › Article › peer-review

2015

Quality of Methods Reporting in Animal Models of Colitis

Bramhall, M., Florez Vargas, O., Stevens, R., Brass, A. & Cruickshank, S., Jun 2015, In: Inflammatory Bowel Diseases. 21, 6, p. 1248-1259 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

102 Downloads (Pure)

2014

A statistical analysis of murine incisional and excisional acute wound models

Ansell, D., Campbell, L., Thomason, H. A., Brass, A. & Hardman, M. J., Mar 2014, In: Wound Repair and Regeneration. 22, 2, p. 281-287 6 p.

Research output: Contribution to journal › Article › peer-review

File

103 Downloads (Pure)

Extracting patterns of database and software usage from the bioinformatics literature

Duck, G., Nenadic, G., Brass, A., Robertson, D. L. & Stevens, R., 1 Sept 2014, In: Bioinformatics. 30, 17, p. 601-608 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

107 Downloads (Pure)

LB-006 Quality of Methods Reporting in Colitis Experiments and the Subsequent Impact on the Development of A Gut Knowledge Base.

Bramhall, M., Florez Vargas, O., Stevens, R., Wilson, J., Cruickshank, S. & Brass, A., 2014, In: Gut. 63, Suppl. 1

Research output: Contribution to journal › Article › peer-review

The languages of health in general practice electronic patient records: a Zipf's law analysis.

Kalankesh, L. R., New, J. P., Baker, P. G. & Brass, A., 2014, In: Journal of Biomedical Semantics. 5, 1

Research output: Contribution to journal › Article › peer-review

The quality of methods reporting in parasitology experiments

Flórez-Vargas, O., Bramhall, M., Noyes, H., Cruickshank, S., Stevens, R. & Brass, A., 30 Jul 2014, In: PLoS ONE. 9, 7, e101131.

Research output: Contribution to journal › Article › peer-review

Open Access

File

92 Downloads (Pure)

2013

BioNerDS: Exploring bioinformatics' database and software use through literature mining

Duck, G., Nenadic, G., Brass, A., Robertson, D. L. & Stevens, R., 15 Jun 2013, In: BMC Bioinformatics. 14, 1, 194.

Research output: Contribution to journal › Article › peer-review

Open Access

File

193 Downloads (Pure)

Genetic analysis of the Trichuris muris-induced model of colitis reveals QTL overlap and a novel gene cluster for establishing colonic inflammation

Levison, S. E., Fisher, P., Hankinson, J., Zeef, L., Eyre, S., Ollier, W. E., McLaughlin, J. T., Brass, A., Grencis, R. K. & Pennock, J. L., 26 Feb 2013, In: BMC Genomics. 14, 1, 127.

Research output: Contribution to journal › Article › peer-review

Processing online crop disease warning information via sensor networks using ISA ontologies

Jackman, P., Gray, A. J. G., Brass, A., Stevens, R., Shi, M., Scuffell, D., Hammersley, S. & Grieve, B., 2013, In: Agricultural Engineering International: CIGR Journal. 15, 3, p. 243-251 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

34 Downloads (Pure)

Taming EHR data: Using semantic similarity to reduce dimensionality

Kalankesh, L., Weatherall, J., Ba-Dhfari, T., Buchan, I. & Brass, A., 2013, In: Studies in Health Technology and Informatics. 192, 1-2, p. 52-56 4 p.

Research output: Contribution to journal › Article › peer-review

Vulnerability versus resilience to prenatal stress in male and female rats; Implications from gene expression profiles in the hippocampus and frontal cortex

Van den Hove, D. L. A., Kenis, G., Brass, A., Opstelten, R., Rutten, B. P. F., Bruschettini, M., Blanco, C. E., Lesch, K. P., Steinbusch, H. W. M. & Prickaerts, J., Oct 2013, In: European Neuropsychopharmacology. 23, 10, p. 1226-1246 20 p.

Research output: Contribution to journal › Article › peer-review

2012

Novel SNP Discovery in African Buffalo, Syncerus caffer, Using High-Throughput Sequencing

le Roex, N., Noyes, H., Brass, A., Bradley, D. G., Kemp, S. J., Kay, S., van Helden, P. D. & Hoal, E. G., 7 Nov 2012, In: PLoS ONE. 7, 11, e48792.

Research output: Contribution to journal › Article › peer-review

Progressive lung cancer determined by expression profilling and transcriptional regulation

Han, N., Dol, Z., Vasieva, O., Hyde, R., Liloglou, T., Raji, O., Brambilla, E., Brambilla, C., Martinet, Y., Sozzi, G., Risch, A., Montuenga, L. M., The EUELC Consortium, Brass, A. & Field, J. K., 2012, In: International Journal of Oncology. 41, 1, p. 242-252

Research output: Contribution to journal › Article › peer-review

The language of gene ontology: a Zipf's law analysis

Kalankesh, L. R., Stevens, R. & Brass, A., 7 Jun 2012, In: BMC Bioinformatics. 13, 1, 127.

Research output: Contribution to journal › Article › peer-review

2011

Differential gene expression in mutant mice overexpressing or deficient in the serotonin transporter: A focus on urocortin 1

Fabre, V., Massart, R., Rachalski, A., Jennings, K., Brass, A., Sharp, T., Lesch, K. P., Lanfumey, L. & Hamon, M., Jan 2011, In: European Neuropsychopharmacology. 21, 1, p. 33-44 11 p.

Research output: Contribution to journal › Article › peer-review

Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection

Noyes, H., Brass, A., Obara, I., Anderson, S., Archibald, A. L., Bradley, D. G., Fisher, P., Freeman, A., Gibson, J., Gicheru, M., Hall, L., Hanotte, O., Hulme, H., McKeever, D., Murray, C., Oh, S. J., Tate, C., Smith, K., Tapio, M. & Wambugu, J. & 3 others, Williams, D. J., Agaba, M. & Kemp, S. J., 31 May 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 22, p. 9304-9309 5 p.

Research output: Contribution to journal › Article › peer-review

Ultradian cortisol pulsatility encodes a distinct, biologically important signal

McMaster, A., Jangani, M., Sommer, P., Han, N., Brass, A., Beesley, S., Lu, W., Berry, A., Loudon, A., Donn, R. & Ray, D. W., 2011, In: PLoS ONE. 6, 1, e15766.

Research output: Contribution to journal › Article › peer-review

2010

A comprehensive genetic analysis of candidate genes regulating response to trypanosoma congolense infection in mice

Goodhead, I., Archibald, A., Amwayi, P., Brass, A., Gibson, J., Hall, N., Margaret, A., Hughes, H., Limo, M., Iraqi, F., Kemp, S. J. & Noyes, H. A., Nov 2010, In: PL o S Neglected Tropical Diseases. 4, 11, e880.

Research output: Contribution to journal › Article › peer-review

Differential gene expression in a rat model of depression based on persistent differences in exploratory activity

Alttoa, A., Kõiv, K., Hinsley, T. A., Brass, A. & Harro, J., May 2010, In: European Neuropsychopharmacology. 20, 5, p. 288-300 12 p.

Research output: Contribution to journal › Article › peer-review

2009

A systematic strategy for the discovery of candidate genes responsible for phenotypic variation.

Fisher, P., Noyes, H., Kemp, S., Stevens, R. & Brass, A., 2009, In: Methods in Molecular Biology. 573, p. 329-345 16 p.

Research output: Contribution to journal › Article › peer-review

Clinical chemistry of congenic mice with quantitative trait loci for predicted responses to Trypanosoma congolense infection

Rathkolb, B., Noyes, H. A., Brass, A., Dark, P., Fuchs, H., Gailus-Durner, V., Gibson, J., De Angelis, M. H., Ogugo, M., Iraqi, F., Kemp, S. J., Naessens, J., Pope, M. E., Wolf, E. & Agaba, M., Sept 2009, In: Infection and immunity. 77, 9, p. 3948-3957 9 p.

Research output: Contribution to journal › Article › peer-review

ExprAlign - the identification of ESTs in non-model species by alignment of cDNA microarray expression profiles

Li, W., Gracey, A. Y., Mello, L. V., Brass, A. & Cossins, A. R., 26 Nov 2009, In: BMC Genomics. 10, 560.

Research output: Contribution to journal › Article › peer-review

Mechanisms controlling anaemia in Trypanosoma congolense infected mice

Noyes, H. A., Alimohammadian, M. H., Agaba, M., Brass, A., Fuchs, H., Gailus-Durner, V., Hulme, H., Iraqi, F., Kemp, S., Rathkolb, B., Wolf, E., de Angelis, M. H., Roshandel, D. & Naessens, J., 13 Apr 2009, In: PLoS ONE. 4, 4, e5170.

Research output: Contribution to journal › Article › peer-review

Pleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: Repercussions for innate and adaptive immunity

Morris, D. G., Waters, S. M., McCarthy, S. D., Patton, J., Earley, B., Fitzpatrick, R., Murphy, J. J., Diskin, M. G., Kenny, D. A., Brass, A. & Wathes, D. C., Sept 2009, In: Physiological Genomics. 39, 1, p. 28-37 9 p.

Research output: Contribution to journal › Article › peer-review

2008

A systematic, data-driven approach to the combined analysis of microarray and QTL data

Rennie, C., Hulme, H., Fisher, P., Hall, L., Agaba, M., Noyes, H. A., Kemp, S. J. & Brass, A., 2008, In: Developments in Biologicals. 132, p. 293-299 6 p.

Research output: Contribution to journal › Article › peer-review

Genomics approaches to study the biology underlying resistance to trypanosomiasis - Some unexpected lessons

Kemp, S. J., Hanotte, O., Agaba, M., Noyes, H. A., Gibson, J., Archibald, A., Rennie, C., Hulme, H. & Brass, A., 2008, In: Developments in Biologicals. 132, p. 89-91 2 p.

Research output: Contribution to journal › Article › peer-review

Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays

Rennie, C., Noyes, H. A., Kemp, S. J., Hulme, H., Brass, A., Hoyle, D. C. & Tate, C., 3 Jul 2008, In: BMC Genomics. 9, 317.

Research output: Contribution to journal › Article › peer-review

2007

Accelerating disease gene identification through integrated SNP data analysis

Missier, P., Embury, S., Hedeler, C., Greenwood, M., Pennock, J. & Brass, A., 2007, In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4544, p. 215-230 15 p.

Research output: Contribution to journal › Article

A systematic strategy for large-scale analysis of genotype-phenotype correlations: Identification of candidate genes involved in African trypanosomiasis

Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., Stevens, R. & Brass, A., Aug 2007, In: Nucleic acids research.. 35, 16, p. 5625-5633 8 p.

Research output: Contribution to journal › Article › peer-review

A systematic strategy for the discovery of candidate genes responsible for phenotypic variation

Fisher, P., Hedeler, C., Wolstencroft, K., Hulme, H., Noyes, H., Kemp, S., Stevens, R. & Brass, A., 20 Nov 2007, In: BMC Bioinformatics. 8, 8, P7.

Research output: Contribution to journal › Article › peer-review

Andrew Brass, BSc, PhD

Research output

Search results