Finn Bacall

2024

EuroScienceGateway D2.1: Reproducible FAIR Digital Objects for Workflows

Soiland-Reyes, S., Chadwick, E., Bacall, F., Fernández, J. M., Grüning, B. & Bayındır, H., 28 Aug 2024, Zenodo. 47 p.

Research output: Book/Report › Other report

Open Access

WorkflowHub: a registry for computational workflows

Gustafsson, O. J. R., Wilkinson, S. R., Bacall, F., Pireddu, L., Soiland-Reyes, S., Leo, S., Owen, S., Juty, N., Fernández, J. M., Grüning, B., Brown, T., Ménager, H., Capella-Gutierrez, S., Coppens, F. & Goble, C., 9 Oct 2024, arXiv.

Research output: Preprint/Working paper › Preprint

Open Access

File

11 Downloads (Pure)

2023

EOSC-Life Implementation of a mechanism for publishing and sharing workflows across instances of the environment

Goble, C., Soiland-Reyes, S., Bacall, F., Owen, S., Pireddu, L. & Leo, S., 2 May 2023, Zenodo. 39 p.

Research output: Book/Report › Other report

EOSC-Life Workflow Collaboratory for the Life Sciences

Goble, C., Bacall, F., Soiland-Reyes, S., Owen, S., Eguinoa, I., Droesbeke, B., Ménager, H., Rodriguez-Navas, L., Fernández, J. M., Grüning, B., Leo, S., Pireddu, L., Crusoe, M., Gustafsson, J., Capella-Gutierrez, S. & Coppens, F., 7 Sept 2023, Proceedings of the Conference on Research Data Infrastructure: 1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities . TIB Open Publishing, Vol. 1. (Proceedings of the Conference on Research Data Infrastructure).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

Making Bioinformatics Training Events and Material More Discoverable Using TeSS, the ELIXIR Training Portal

Bacall, F., Apaolaza, A., Andrabi, M., Child, C., Goble, C., Sand, O. & Botzki, A., 21 Feb 2023, In: Current Protocols. 3, 2, e682.

Research output: Contribution to journal › Article › peer-review

Open Access

2021

Implementing FAIR Digital Objects in the EOSC-Life Workflow Collaboratory

Goble, C., Soiland-Reyes, S., Bacall, F., Owen, S., Williams, A., Eguinoa, I., Droesbeke, B., Leo, S., Pireddu, L., Rodríguez-Navas, L., Fernández, J. M., Capella-Gutierrez, S., Ménager, H., Grüning, B., Serrano-Solano, B., Ewels, P. & Coppens, F., 1 Mar 2021, In: Zenodo.

Research output: Contribution to journal › Article

Open Access

RO-Crate Metadata Specification 1.1.1

Sefton, P., Carragáin, E. Ó., Soiland-Reyes, S., Corcho, O., Garijo, D., Palma, R., Coppens, F., Goble, C., Fernández, J. M., Chard, K., Gomez-Perez, J. M., Crusoe, M. R., Eguinoa, I., Juty, N., Holmes, K., Clark, J. A., Capella-Gutierrez, S., Gray, A. J. G., Owen, S. & Williams, A. R. & 19 others, Tartari, G., Bacall, F., Thelen, T., Ménager, H., Rodríguez-Navas, L., Walk, P., whitehead, B., Wilkinson, M., Groth, P., Bremer, E., Castro, L. G., Sebby, K., Kanitz, A., Trisovic, A., Kennedy, G., Graves, M., Koehorst, J., Leo, S. & Portier, M., 15 Feb 2021, researchobject.org.

Research output: Book/Report › Book

Open Access

2020

RO-Crate Metadata Specification 1.1

Sefton, P., Carragáin, E. Ó., Soiland-Reyes, S., Corcho, O., Garijo, D., Palma, R., Coppens, F., Goble, C., Fernández, J. M., Chard, K., Gomez-Perez, J. M., Crusoe, M. R., Eguinoa, I., Juty, N., Holmes, K., Clark, J. A., Capella-Gutierrez, S., Gray, A. J. G., Owen, S. & Williams, A. R. & 18 others, Tartari, G., Bacall, F., Thelen, T., Ménager, H., Rodríguez-Navas, L., Walk, P., whitehead, B., Wilkinson, M., Groth, P., Bremer, E., Castro, L. G., Sebby, K., Kanitz, A., Trisovic, A., Kennedy, G., Graves, M., Koehorst, J. & Leo, S., 30 Oct 2020, researchobject.org. 75 p.

Research output: Book/Report › Book

Open Access

TeSS: a platform for discovering life-science training opportunities

Beard, N., Bacall, F., Nenadic, A., Thurston, M., Goble, C. A., Sansone, S.-A., Attwood, T. K. & Wren, J. (Editor), 11 Feb 2020, In: Bioinformatics.

Research output: Contribution to journal › Article › peer-review

Open Access

2019

RO-Crate Metadata Specification 1.0

Sefton, P., Carragáin, E. Ó., Soiland-Reyes, S., Corcho, O., Garijo, D., Palma, R., Coppens, F., Goble, C., González, J. M. F., Chard, K., Gomez-Perez, J. M., Crusoe, M. R., Eguinoa, I., Juty, N., Holmes, K., Clark, J. A., Capella-Gutierrez, S., Gray, A. J. G., Owen, S. & Williams, A. R. & 3 others, Tartari, G., Bacall, F. & Thelen, T., 15 Nov 2019, Zenodo.

Research output: Other contribution

Open Access

2018

FAIR Bioinformatics computation and data management: FAIRDOM and the Norwegian Digital Life initiative

Stanford, N., Bacall, F., Zamanzad Ghavidel, F., Golebiewski, M., Jonassen, I., Kleppe, R., Krebs, O., Leonov, H., Owen, S., Peterson, K., Rey, M., Soiland-Reyes, S., Tekle, K., Weiderman, A., Williams, A., Wittig, U., Wolstencroft, K., Goksøyr, A., Snoep, J. & Vik, J. O. & 2 others, Müller, W. & Goble, C., 4 Sept 2018, (Accepted/In press). 4 p.

Research output: Contribution to conference › Abstract › peer-review

Open Access

File

371 Downloads (Pure)

2017

ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR

Rustici, G., Larcombe-McDouall, J. B., Hendricusdottir, R., Attwood, T. K., Bacall, F., Beard, N., Bellis, L. J., Dunn, W. B., Hancock, J. M., Nenadic, A., Orengo, C., Overduin, B., Sansone, S. A., Thurston, M., Viant, M. R., Winder, C. L., Goble, C. A. & Ponting, C. P., 21 Jul 2017, In: F1000Research. 6, 952.

Research output: Contribution to journal › Article › peer-review

Open Access

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research

Wolstencroft, K., Krebs, O., Snoep, J., Stanford, N. J., Bacall, F., Golebiewski, M., Kuzyakiv, R., Nguyen, Q., Owen, S., Soiland-Reyes, S., Straszewski, J., van Niekerk, D. D., Williams, A., Malmström, L., Rinn, B., Müller, W. & Goble, C., Jan 2017, In: Nucleic acids research. 45, D1, p. D404-D407 4 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

17 Downloads (Pure)

2016

BioVeL: A virtual laboratory for data analysis and modelling in biodiversity science and ecology

Hardisty, A. R., Bacall, F., Beard, N., Balcázar-Vargas, M. P., Balech, B., Barcza, Z., Bourlat, S. J., Giovanni, R., Jong, Y., Leo, F., Dobor, L., Donvito, G., Fellows, D., Guerra, A. F., Ferreira, N., Fetyukova, Y., Fosso, B., Giddy, J., Goble, C. & Güntsch, A. & 32 others, Haines, R., Ernst, V. H., Hettling, H., Hidy, D., Horváth, F., Ittzés, D., Ittzés, P., Jones, A., Kottmann, R., Kulawik, R., Leidenberger, S., Lyytikäinen-Saarenmaa, P., Mathew, C., Morrison, N., Nenadic, A., Hidalga, A. N., Obst, M., Oostermeijer, G., Paymal, E., Pesole, G., Pinto, S., Poigné, A., Fernandez, F. Q., Santamaria, M., Saarenmaa, H., Sipos, G., Sylla, K. H., Tähtinen, M., Vicario, S., Vos, R. A., Williams, A. & Yilmaz, P., 20 Oct 2016, In: Ecology. 16, 1, 49.

Research output: Contribution to journal › Article › peer-review

Open Access

FAIRDOM: Reproducible Systems Biology through FAIR Asset Management

Stanford, N., Bacall, F., Golebiewski, M., Krebs, O., Kuzyakiv, R., Nguyen, Q., Owen, S., Soiland-Reyes, S., Straszewski, J., van Niekerk, D., Williams, A., Wolstencroft, K., Malmström, L., Rinn, B., Snoep, J., Müller, W. & Goble, C., 2016, (Accepted/In press). 5 p.

Research output: Contribution to conference › Paper › peer-review

Open Access

File

223 Downloads (Pure)

Finn Bacall

Research output

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