Ian Hall

Search results

• 2023

  A comparison of experience sampled hay fever symptom severity across rural and urban areas of the UK

  Gledson, A., Lowe, D., Reani, M., Topping, D., Hall, I., Cruickshank, S., Harwood, A., Woodcock, J. & Jay, C., 2023, In: Scientific Reports.

  Research output: Contribution to journal › Article › peer-review

  • Datum 100%
  • Report 100%
  • Fever 100%
  • Hay 100%
  • Pollen Allergy 100%

• Calculation of Epidemic First Passage and Peak Time Probability Distributions

  Curran-Sebastian, J., Pellis, L., Hall, I. & House, T., 17 Jan 2023, (Unpublished).

  Research output: Working paper › Preprint

  File

  • Time 100%
  • Epidemic 40%
  • Probability Distribution 40%
  • Ordinary Differential Equation 40%
  • Procedures 20%
  15 Downloads (Pure)

• Modelling the impact of repeat asymptomatic testing policies for staff on SARS-CoV-2 transmission potential

  Whitfield, C. A., University of Manchester COVID-19 Modelling Group & Hall, I., 21 Jan 2023, In: Journal of Theoretical Biology. 557, 111335.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Testing 100%
  • Electric Potential 50%
  • Workplace 50%
  • Severe Acute Respiratory Syndrome 50%
  • Modeling 50%
• 2022

  Agility and sustainability: A qualitative evaluation of COVID-19 Non-pharmaceutical Interventions (NPIs) in the UK logistics sector

  Wei, H., Daniels, S., Whitfield, C. A., Han, Y., Denning, D. W., Hall, I., Regan, M., Verma, A. & van Tongeren, M., 2022

  Research output: Other contribution

• Agility and Sustainability: A Qualitative Evaluation of COVID-19 Non-pharmaceutical Interventions in the UK Logistics Sector

  Wei, H., Daniels, S., Whitfield, C., Han, Y., Denning, D. W., Hall, I., Regan, M., Verma, A. & Van Tongeren, M., 1 Jun 2022, In: Frontiers in Public Health. 10, 864506.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Logistics 100%
  • Measure 80%
  • Obstetric Delivery 80%
  • Control 60%
  • Implementation 60%

• Analysis and comprehensive lineage identification for SARS-CoV-2 genomes through scalable learning methods

  Cahuantzi, R., Lythgoe, K., Hall, I., Pellis, L. & House, T., 14 Sep 2022, In: bioRxiv.

  Research output: Contribution to journal › Article

• Authors' reply to the discussion of ‘Estimation of reproduction numbers in real time: conceptual and statistical challenges’ by Pellis et al. in Session 3 of the Royal Statistical Society's Special Topic Meeting on COVID ‐19 transmission: 11 June 2021

  Pellis, L., Birrell, P. J., Blake, J., Hall, I., House, T. A., Overton, C. E., Scarabel, F., Stage, H. B. & Angelis, D. D., Nov 2022, In: Journal of the Royal Statistical Society: Series A (Statistics in Society).

  Research output: Contribution to journal › Article › peer-review

• A within-host model of SARS-CoV-2 infection

  Carruthers, J., Xu, J., Finnie, T. & Hall, I., 2022

  Research output: Other contribution

• Check your assumptions: Further scrutiny of basic model frameworks of antimicrobial resistance

  Grunnill, M., Hall, I. & Finnie, T., 7 Dec 2022, In: Journal of Theoretical Biology. 554, p. 111277

  Research output: Contribution to journal › Article › peer-review

  • Antiinfective Agent 100%
  • Model 83%
  • Strain 83%
  • Assumption 83%
  • Simulation 50%

• Effectiveness of the BNT162b2 (Pfizer-BioNTech) and the ChAdOx1 nCoV-19 (Oxford-AstraZeneca) vaccines for reducing susceptibility to infection with the Delta variant (B.1.617.2) of SARS-CoV-2

  Pattni, K., Hungerford, D., Adams, S., Buchan, I., Cheyne, C. P., García-Fiñana, M., Hall, I., Hughes, D. M., Overton, C. E., Zhang, X. & Sharkey, K. J., 20 Mar 2022, In: BMC Infectious Diseases. 22, 1, 270.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Vaccine 100%
  • Infection 75%
  • Severe Acute Respiratory Syndrome Coronavirus 2 50%
  • Single Drug Dose 25%
  • Public Health 12%

• EpiBeds: Data informed modelling of the COVID-19 hospital burden in England

  Overton, C. E., Pellis, L., Stage, H. B., Scarabel, F., Burton, J., Fraser, C., Hall, I., House, T. A., Jewell, C., Nurtay, A., Pagani, F. & Lythgoe, K. A., Sep 2022, In: PLoS computational biology. 18, 9, p. e1010406

  Research output: Contribution to journal › Article › peer-review

  • Hospital 100%
  • Patient 50%
  • COVID-19 25%
  • Prediction 12%
  • Death 12%

• Epidemiological modelling in refugee and internally displaced people settlements: challenges and ways forward

  Aylett-Bullock, J., Gilman, R. T., Hall, I., Kennedy, D., Evers, E. S., Katta, A., Ahmed, H., Fong, K., Adib, K., Al Ariqi, L., Ardalan, A., Nabeth, P., von Harbou, K., Hoffmann Pham, K., Cuesta-Lazaro, C., Quera-Bofarull, A., Gidraf Kahindo Maina, A., Valentijn, T., Harlass, S., Krauss, F., & 6 othersHuang, C., Moreno Jimenez, R., Comes, T., Gaanderse, M., Milano, L. & Luengo-Oroz, M., 9 Mar 2022, In: BMJ Global Health. 7, 3, e007822.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Contexts 100%
  • Decision-Making 50%
  • Communication 50%
  • Roadmap 50%
  • Healthcare System 50%

• Estimating the potential for global dissemination of pandemic pathogens using the global airline network and healthcare development indices

  Meslé, M. M. I., Vivancos, R., Hall, I. M., Christley, R. M., Leach, S. & Read, J. M., 23 Feb 2022, In: Scientific Reports. 12, 1, 3070.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Airline 100%
  • Health Care 83%
  • Healthcare 83%
  • Electric Potential 66%
  • Connectivity 66%

• Estimation of reproduction numbers in real time: Conceptual and statistical challenges

  Pellis, L., Birrell, P. J., Blake, J., Overton, C. E., Scarabel, F., Stage, H. B., Brooks‐Pollock, E., Danon, L., Hall, I., House, T. A., Keeling, M. J., Read, J. M. & Angelis, D. D., 29 Dec 2022, In: Journal of the Royal Statistical Society: Series A (Statistics in Society).

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Lessons to learn from roadmapping in cleaning and decontamination

  Wilson, D. I., Christie, G., Fryer, P. J., Hall, I. M., Landel, J. R. & Whitehead, K. A., 1 Sep 2022, In: Food and Bioproducts Processing. 135, p. 156-164

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Quantitative 100%
  • Decontamination 75%
  • Economic and Social Development 50%
  • Serials 50%
  • Activity 50%

• Modeling the factors that influence exposure to SARS-CoV-2 on a subway train carriage

  Miller, D., King, M-F., Nally, J., Drodge, J. R., Reeves, G. I., Bate, A. M., Cooper, H., Dalrymple, U., Hall, I., Lopez-Garcia, M., Parker, S. T. & Noakes, C. J., 15 Feb 2022, In: Indoor Air. 32, 2, e12976.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Virus 100%
  • Rate 100%
  • Model 74%
  • Carriage 74%
  • Models 74%

• Modelling the impact of non-pharmaceutical interventions on workplace transmission of SARS-CoV-2 in the home-delivery sector

  Whitfield, C. A., Tongeren, M. V., Han, Y., Wei, H., Daniels, S., Regan, M., Denning, D. W., Verma, A., Pellis, L. & Hall, I., 18 Mar 2022

  Research output: Other contribution

• Novel methods for estimating the instantaneous and overall COVID-19 case fatality risk among care home residents in England

  Overton, C. E., Webb, L., Datta, U., Fursman, M., Hardstaff, J., Hiironen, I., Paranthaman, K., Riley, H., Sedgwick, J., Verne, J., Willner, S., Pellis, L. & Hall, I., 15 Feb 2022.

  Research output: Working paper › Preprint

  File
  3 Downloads (Pure)

• School Attendance Registers for the Syndromic Surveillance of Infectious Intestinal Disease in UK Children: Protocol for a Retrospective Analysis

  Donaldson, A. L., Harris, J. P., Vivancos, R., Hungerford, D., Hall, I. & O'Brien, S. J., 20 Jan 2022, In: JMIR research protocols. 11, 1, e30078.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Enteropathy 100%
  • Child 61%
  • Surveillance 38%
  • Diseases 30%
  • School-Aged Child 30%

• Simplified Within Host and Dose-response models of SARS-CoV-2

  Xu, J., Carruthers, J., Finnie, T. & Hall, I., 22 Sep 2022

  Research output: Other contribution
• 2021

  Challenges in control of COVID-19: short doubling time and long delay to effect of interventions

  Pellis, L., Scarabel, F., Stage, H. B., Overton, C. E., Chappell, L. H. K., Fearon, E., Bennett, E., Lythgoe, K. A., House, T. A. & Hall, I., 19 Jul 2021, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 376, 1829, 20200264.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Time 100%
  • Reproduction 66%
  • Procedures 33%
  • Control 33%
  • Growth Rate 33%
  55 Downloads (Pure)

• COVID-19 testing in outbreak-free care homes: what are the public health benefits?

  Green, R., Tulloch, J. S. P., Tunnah, C., Coffey, E., Lawrenson, K., Fox, A., Mason, J., Barnett, R., Constantine, A., Shepherd, W., Ashton, M., Beadsworth, M. B. J., Vivancos, R., Hall, I., Walker, N. & Ghebrehewet, S., 1 May 2021, In: Journal of Hospital Infection. 111, p. 89-95 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Home Care 100%
  • Resident 100%
  • COVID-19 88%
  • Confidence Interval 77%
  • Symptom 22%

• Efficacy of antibiotic medication strategy following a bioterrorist attack involving Francisella tularensis

  Wood, R. M. & Hall, I. M., 13 Aug 2021, In: Journal of the Operational Research Society.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Organisms 100%
  • Host 100%
  • Francisella Tularensis 100%
  • Infection 50%
  • Biological Product 50%
  3 Downloads (Pure)

• EpiBeds: Data informed modelling of the COVID-19 hospital burden in England

  Overton, C. E., Pellis, L., Stage, H. B., Scarabel, F., Burton, J., Fraser, C., Hall, I., House, T. A., Jewell, C., Nurtay, A., Pagani, F. & Lythgoe, K. A., 12 Oct 2021, arXiv.org, p. 1-25, 35 p.

  Research output: Working paper › Preprint

  Open Access

  File

  • Hospital 100%
  • Patient 57%
  • COVID-19 28%
  • Death 14%
  • Clinical Pathway 14%
  4 Downloads (Pure)

• Excess mortality for care home residents during the first 23 weeks of the COVID-19 pandemic in England: a national cohort study

  Morciano, M., Stokes, J., Kontopantelis, E., Hall, I. & Turner, A., 5 Mar 2021, In: BMC Medicine. 19, 71, p. 1-11 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Death 100%
  • Home Care 88%
  • COVID-19 66%
  • Mortality 33%
  • Nursing 22%
  65 Downloads (Pure)

• Growth, reproduction numbers and factors affecting the spread of SARS-CoV-2 novel variants of concern in the UK from October 2020 to July 2021: a modelling analysis

  Ward, T., Glaser, A., Johnsen, A., Xu, F., Hall, I. & Pellis, L., 24 Nov 2021, In: BMJ Open. 11, 11, e056636.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Growth 100%
  • Age Groups 30%
  • Gene 23%
  • Reproductive Medicine 23%
  • Ethnicity 23%

• Modelling infectious disease transmission potential as a function of human behaviour

  Walters, C. E., Dunbar, M. B-N., Weston, D. & Hall, I. M., 20 Jul 2021

  Research output: Other contribution

• Risk factors associated with respiratory infectious disease-related presenteeism: a rapid review

  Daniels, S., Wei, H., Han, Y., Catt, H., Denning, D. W., Hall, I., Regan, M., Verma, A., Whitfield, C. & Van Tongeren, M., 1 Dec 2021, In: BMC Public Health. 21, 1, 1955.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Respiratory Infectious Disease 100%
  • COVID-19 42%
  • Workplace 42%
  • Prevalence 28%
  • Age 14%

• SARS-CoV-2 antigen testing: weighing the false positives against the costs of failing to control transmission

  Fearon, E., Buchan, I. E., Das, R., Davis, E. L., Fyles, M., Hall, I., Hollingsworth, T. D., House, T., Jay, C., Medley, G. F., Pellis, L., Quilty, B. J., Silva, M. E. P., Stage, H. B. & Wingfield, T., Jul 2021, In: The Lancet. Respiratory medicine. 9, 7, p. 685-687 3 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

• SARS-CoV-2 antigen testing: weighing the false positives against the costs of failing to control transmission

  Fearon, E., Buchan, I., Das, R., Davis, E., Fyles, M., Hall, I., Hollingsworth, T., House, T., Jay, C., Medley, G., Pellis, L., Quilty, B., Silva, M., Stage, H. & Wingfield, T., Jul 2021, In: The Lancet Respiratory Medicine. 9, 7, p. 685-687

  Research output: Contribution to journal › Editorial › peer-review

• School Attendance Registers for the Syndromic Surveillance of Infectious Intestinal Disease in UK Children: Protocol for a Retrospective Analysis (Preprint)

  Donaldson, A. L., Harris, J. P., Vivancos, R., Hungerford, D., Hall, I. & O'Brien, S. J., 30 Apr 2021

  Research output: Other contribution

• Statistical design and analysis of diagnostic tests for mutating viruses

  Han, Y., Sun, Y., Hsu, J. C., House, T., Gent, N. & Hall, I., 2021, In: medRxiv.

  Research output: Contribution to journal › Article

• Using a household-structured branching process to analyse contact tracing in the SARS-CoV-2 pandemic

  Fyles, M., Fearon, E., Overton, C., Wingfield, T., Medley, G. F., Hall, I., Pellis, L. & House, T., 19 Jul 2021, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 376, 1829, 20200267.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Contact 100%
  • Household 85%
  • Contact Examination 71%
  • Time 57%
  • Isolation 42%
  56 Downloads (Pure)
• 2020

  An agent-based model about the effects of fake news on a norovirus outbreak

  Brainard, J., Hunter, P. R. & Hall, I. R., Apr 2020, In: Revue d'Epidemiologie et de Sante Publique. 68, 2, p. 99-107 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Health 100%
  • Norovirus 75%
  • Information 50%
  • Interpersonal Communication 25%
  • Internet 25%

• Challenges in control of Covid-19: short doubling time and long delay to effect of interventions

  Pellis, L., Scarabel, F., Stage, H. B., Overton, C. E., Chappell, L. H. K., Lythgoe, K. A., Fearon, E., Bennett, E., Curran-Sebastian, J., Das, R., Fyles, M., Lewkowicz, H., Pang, X., Vekaria, B., Webb, L., House, T. & Hall, I., 31 Mar 2020, In: medRxiv.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Time 100%
  • COVID-19 100%
  • Subject 50%
  • Control 50%
  • Evaluation 50%
  54 Downloads (Pure)

• Coordinating the real‐time use of global influenza activity data for better public health planning

  Biggerstaff, M., Dahlgren, F. S., Fitzner, J., George, D., Hammond, A., Hall, I., Haw, D., Imai, N., Johansson, M. A., Kramer, S., McCaw, J. M., Moss, R., Pebody, R., Read, J. M., Reed, C., Reich, N. G., Riley, S., Vandemaele, K., Viboud, C. & Wu, J. T., 3 Mar 2020, In: Influenza and Other Respiratory Viruses. 14, 2, p. 105-110 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Influenza 100%
  • Analytics 66%
  • Health 50%
  • Risk Communication 33%
  • Incidence 33%
  27 Downloads (Pure)

• Correction to 'A dose and time response Markov model for the in-host dynamics of infection with intracellular bacteria following inhalation: with application to Francisella tularensis'

  Wood, R. M., Egan, J. R. & Hall, I. M., May 2020, In: Journal of the Royal Society. Interface. 17, 166, p. 20200189

  Research output: Contribution to journal › Comment/debate

• Dose–Response Modeling: Extrapolating From Experimental Data to Real-World Populations

  Pratt, A., Bennett, E., Gillard, J., Leach, S. & Hall, I., 23 Sep 2020, (E-pub ahead of print) In: Risk Analysis.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Infection 100%
  • Biological Product 100%
  • Host 100%
  • Plague 100%
  • Anthrax 100%

• Using statistics and mathematical modelling to understand infectious disease outbreaks: COVID-19 as an example

  Overton, C., Stage, H., Ahmad, S., Curran-Sebastian, J., Dark, P., Das, R., Fearon, E., Felton, T., Fyles, M., Gent, N., Hall, I., House, T., Lewkowicz, H., Pang, X., Pellis, L., Sawko, R., Ustianowski, A., Vekaria, B. & Webb, L., 4 Jul 2020, In: Infectious Disease Modelling.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • COVID-19 100%
  • Infection 66%
  • Epidemic 66%
  • Pandemic 33%
  • Dynamics 33%
• 2019

  Analysis of individual patient data to describe the incubation period distribution of Shiga-toxin producing Escherichia coli

  Awofisayo-Okuyelu, A., Hall, I., Arnold, E., Byrne, L. & McCarthy, N., 2019, In: Epidemiology and infection. 147, p. e162

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Incubation Time 100%
  • Patient 37%
  • Bloody Diarrhea 37%
  • Shiga Toxin Producing Escherichia Coli 37%
  • Analysis 12%

• A novel method for determining infiltration of mechanically ventilated buildings

  Kulmala, I., Parviainen, H., Hall, I. & Pasanen, P., 25 Jun 2019, In: Science and Technology for the Built Environment.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Infiltration 100%
  • Buildings 20%
  • Air 10%
  • Models 10%
  • Wind 10%

• A systematic review of infectious illness Presenteeism: prevalence, reasons and risk factors

  Webster, R. K., Liu, R., Karimullina, K., Hall, I., Amlôt, R. & Rubin, G. J., 21 Jun 2019, In: BMC Public Health. 19, 1, p. 799

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Diseases 100%
  • Workplace 57%
  • Health 42%
  • Prevalence 42%
  • Job 42%

• Dispersion of Legionella bacteria in atmosphere: A practical source location estimation method

  Dyke, S., Barrass, I., Pollock, K. & Hall, I. M., 25 Nov 2019, In: PLoS ONE. 14, 11, p. e0224144

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Model 100%
  • Planetary Atmosphere 100%
  • Bacteria 50%
  • Droplet 50%
  • Shape 25%
  42 Downloads (Pure)

• Incubation Period of Shiga Toxin-Producing Escherichia coli

  Awofisayo-Okuyelu, A., Brainard, J., Hall, I. & McCarthy, N., 16 Oct 2019, In: Epidemiologic Reviews. 41, 1, p. 121–129 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Incubation Time 100%
  • Patient 20%
  • Life 20%
  • Age 20%
  • Comprehension 20%

• Methods for calculating credible intervals for ratios of beta distributions with application to relative risks of death during the second plague pandemic

  Bekker-Dunbar, M., Finnie, T., Sloane, B. & Hall, I., 2019, In: P L o S One. 14, 2

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Relative Risk 100%
  • Credible Interval 100%
  • Bayesian 50%
  • Random Variable 50%
  • Contingency Table 50%

• The use and reporting of airline passenger data for infectious disease modelling: a systematic review

  Hall, I., 1 Aug 2019, In: Euro surveillance: bulletin européen sur les maladies transmissibles = European communicable disease bulletin. 31.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Airline 100%
  • Passenger 54%
  • Datum 31%
  • Country 27%
  • Balance of Trade 27%

• Within-host mathematical modelling of the incubation period of Salmonella Typhi

  Hall, I., 11 Sep 2019, In: Royal Society Open Science.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Incubation 100%
  • Incubation Time 100%
  • Infection 100%
  • Host 60%
  • Parameter 60%
• 2018

  Deposition of respiratory virus pathogens on frequently touched surfaces at airports

  PANDHUB consortium, 29 Aug 2018, In: BMC Infectious Diseases. 18, 1, p. 1-7 7 p., 437.

  Research output: Contribution to journal › Article

  Open Access

  • Virus 100%
  • Air Sampling 50%
  • Pathogen 33%
  • Plastic 33%
  • Nucleic Acid 33%

• Drumming-associated anthrax incidents: exposures to low levels of indoor environmental contamination

  Bennett, E., Hall, I., Pottage, N. J., Silman, N. J. & Bennett, A. M., 2018, In: Epidemiology and infection.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Contamination 100%
  • Bacterial Spore 40%
  • Anthrax 40%
  • Public 20%
  • Management 20%

• Epidemiological Data and Model Requirements to Support Policy

  Baguelin, M., Buckingham-Jeffery, E., Hall, I., House, T., Kinyanjui, T. M. & Pellis, L., 13 Jun 2018, (Accepted/In press) Proceedings of the ACM SIGKDD Workshop on Epidemiology meets Data Mining and Knowledge Discovery (epiDAMIK). p. 45-49 5 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Realism 100%
  • Policy 66%
  • Datum 66%
  • Support 66%
  • Model 66%