Personal profile
Biography
2017 – Senior Lecturer, Faculty of Life Sciences, University of Manchester.
2012 – 2017 Lecturer, Faculty of Life Sciences, University of Manchester.
2007 – Pres. Manchester Fellow, Faculty of Life Sciences, University of Manchester, UK.
2003 – 2007 Ruth L. Kirschstein NIH Postdoctoral Fellow, Center for Integrative Genomics, University of California, Berkeley, USA, Principal Investigator: Dr. Michael Levine, Ph.D.
1997 – 2002 Doctor of Philosophy, Program in Cell and Molecular Biology, University of California, San Diego, USA, Thesis Advisor: Dr. William McGinnis, Ph.D.
1995 – 1997 Master of Science, Systematics, University of Nevada, Las Vegas, College of Arts and Sciences, USA, Thesis Advisor: Andrew P. Martin, Ph.D.
1991 – 1995 Bachelor of Arts, Philosophy and Linguistics, University of Nevada, Las Vegas, College of Arts and Sciences, USA.
Research interests
My work focuses on identification and functional characterization of non-coding RNAs (ncRNAs). In particular how they affect gene expression and function during differentiation. I am also pursuing how the evolution of ncRNAs may have contributed to diversification of metazoan bodyplans.
Genomic tools have provided a better description of the complete transcriptome of diverse metazoans. An unexpected finding has been the huge number of potential ncRNAs. These ncRNAs are implicated in a vast array of processes including regulation of transcription, translation, epigenetic control of chromatin, mono-allelic expression, dosage compensation and silencing. In order to better understand the role of ncRNAs in these processes my lab is focusing on one of the most highly conserved and ncRNA rich regions in metazoan genomes, the Hox complex. The Hox complex is composed of a set of related transcription factors that establish positional identity on the anterior-posterior axis. The Hox complex also contains a diverse suite of ncRNAs including miRNAs, anti-sense transcripts, transcribed enhancers and boundary elements as well as many uncharacterized transcripts. At least two of these ncRNAs, both miRNAs, have homeotic function and attenuate the actions of nearby protein coding Hox genes. The highly orchestrated expression and possibly the conserved organization of this complex may be associated with the function of these ncRNAs.
We have begun to define and visualize these ncRNAs transcripts in fly, beetle, and bee using a combination of tiling microarrays and nascent transcript fluorescent in situ hybridization. In addition, we are using genetics tools to examine the functions of these RNAs with the intent of describing their role in the development of animals. Ultimately, this comparative approach will describe both how these small RNAs function and how their evolution has contributed to the diversification of the animal bodyplan.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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Collaborations and top research areas from the last five years
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Intrinsic changes in cell differentiation and identity drive impaired wound healing in aged female murine skin
Dube, C., Oguz, G., Ong, Y. H. B., Sudhagar, S., Prabhakar, S., Ronshaugen, M., Ramasamy, A. (Lead), Lim, C. Y. (Lead) & Mace, K. (Lead), 1 Nov 2025, In: Biogerontology.Research output: Contribution to journal › Article › peer-review
Open Access -
Age-related alterations in macrophage distribution and function are associated with delayed cutaneous wound healing
Dube, C., Binn Ong, Y. H., Wemyss, K., Krishnan, S., Ju Tan, T., Janela, B., Grainger, J., Ronshaugen, M., Mace, K. & Lim, C. Y., 8 Jul 2022, In: Frontiers in Immunology.Research output: Contribution to journal › Article › peer-review
Open Access -
miR-9a regulates levels of both rhomboid mRNA and protein in the early Drosophila melanogaster embryo
Gallicchio, L., Griffiths-Jones, S. & Ronshaugen, M., 1 Apr 2022, In: G3 Genes|Genomes|Genetics. 12, 4, jkac026.Research output: Contribution to journal › Article › peer-review
Open Access -
Single cell visualisation of mir-9a and Senseless co-expression during Drosophila melanogaster embryonic and larval peripheral nervous system development
Gallicchio, L., Griffiths-Jones, S. & Ronshaugen, M., 18 Jan 2021, In: G3: Genes, Genomes, Genetics. 11, 1, p. 1-11 jkaa010.Research output: Contribution to journal › Article › peer-review
Open Access -
The developmental transcriptome of Parhyale hawaiensis: microRNAs and mRNAs show different expression dynamics during the maternal-zygotic transition
Calvo, L., Birgaoanu, M., Pettini, T., Ronshaugen, M. & Griffiths-Jones, S., 25 Jun 2021, In: bioRxiv.Research output: Contribution to journal › Article › peer-review
Datasets
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Abundant expression of somatic transposon-derived piRNAs throughout Tribolium castaneum embryogenesis
Ninova, M. (Contributor), Griffiths-Jones, S. (Contributor) & Ronshaugen, M. (Contributor), figshare , 26 Sept 2017
DOI: 10.6084/m9.figshare.c.3889432.v1, https://figshare.com/collections/Abundant_expression_of_somatic_transposon-derived_piRNAs_throughout_Tribolium_castaneum_embryogenesis/3889432/1
Dataset
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Supplementary Data for PhD Thesis: Myeloid cell ageing and wound healing: analysing ageing-related changes to myeloid cells and their impact on cutaneous wound healing
Dube, C. (Creator), Ronshaugen, M. (Creator) & Mace, K. A. (Creator), University of Manchester Figshare, 14 Dec 2022
DOI: 10.48420/21701534, https://figshare.manchester.ac.uk/articles/dataset/Myeloid_cell_ageing_and_wound_healing_analysing_ageing-related_changes_to_myeloid_cells_and_their_impact_on_cutaneous_wound_healing_PhD_Thesis/21701534
Dataset