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Sam Griffiths-Jones

Prof

 https://orcid.org/0000-0001-6043-807X
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Search results

  • 2008

    Criteria for annotation of plant microRNAs

    Meyers, B. C., Axtell, M. J., Bartel, B., Bartel, D. P., Baulcombe, D., Bowman, J. L., Cao, X., Carrington, J. C., Chen, X., Green, P. J., Griffiths-Jones, S., Jacobsen, S. E., Mallory, A. C., Martienssen, R. A., Poethig, R. S., Qi, Y., Vaucheret, H., Voinnet, O., Watanabe, Y., Weigel, D., & 1 othersZhui, J. K., Dec 2008, In: Plant Cell. 20, 12, p. 3186-3190 4 p.

    Research output: Contribution to journal › Article › peer-review

  • Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum

    Mourier, T., Carret, C., Kyes, S., Christodoulou, Z., Gardner, P. P., Jeffares, D. C., Pinches, R., Barrell, B., Berriman, M., Griffiths-Jones, S., Ivens, A., Newbold, C. & Pain, A., Feb 2008, In: Genome research. 18, 2, p. 281-292 11 p.

    Research output: Contribution to journal › Article › peer-review

  • miRBase: Tools for microRNA genomics

    Griffiths-Jones, S., Saini, H. K., Van Dongen, S. & Enright, A. J., Jan 2008, In: Nucleic acids research.. 36, 1, p. D154-D158

    Research output: Contribution to journal › Article › peer-review

  • The RNA WikiProject: Community annotation of RNA families

    Daub, J., Gardner, P. P., Tate, J., Ramsköl, D., Manske, M., Scott, W. G., Weinberg, Z., Griffiths-Jones, S. & Bateman, A., Dec 2008, In: RNA. 14, 12, p. 2462-2464 2 p.

    Research output: Contribution to journal › Article › peer-review

  • 2007

    Annotating noncoding RNA genes

    Griffiths-Jones, S., 2007, In: Annual Review of Genomics and Human Genetics. 8, p. 279-298 19 p.

    Research output: Contribution to journal › Article › peer-review

  • Evolution of genes and genomes on the Drosophila phylogeny

    Clark, A. G., Eisen, M. B., Smith, D. R., Bergman, C. M., Oliver, B., Markow, T. A., Kaufman, T. C., Kellis, M., Gelbart, W., Iyer, V. N., Pollard, D. A., Sackton, T. B., Larracuente, A. M., Singh, N. D., Abad, J. P., Abt, D. N., Adryan, B., Aguade, M., Akashi, H., Anderson, W. W., & 395 othersAquadro, C. F., Ardell, D. H., Arguello, R., Artieri, C. G., Barbash, D. A., Barker, D., Barsanti, P., Batterham, P., Batzoglou, S., Begun, D., Bhutkar, A., Blanco, E., Bosak, S. A., Bradley, R. K., Brand, A. D., Brent, M. R., Brooks, A. N., Brown, R. H., Butlin, R. K., Caggese, C., Calvi, B. R., Bernardo De Carvalho, A., Caspi, A., Castrezana, S., Celniker, S. E., Chang, J. L., Chapple, C., Chatterji, S., Chinwalla, A., Civetta, A., Clifton, S. W., Comeron, J. M., Costello, J. C., Coyne, J. A., Daub, J., David, R. G., Delcher, A. L., Delehaunty, K., Do, C. B., Ebling, H., Edwards, K., Eickbush, T., Evans, J. D., Filipski, A., Findeiß, S., Freyhult, E., Fulton, L., Fulton, R., Garcia, A. C. L., Gardiner, A., Garfield, D. A., Garvin, B. E., Gibson, G., Gilbert, D., Gnerre, S., Godfrey, J., Good, R., Gotea, V., Gravely, B., Greenberg, A. J., Griffiths-Jones, S., Gross, S., Guigo, R., Gustafson, E. A., Haerty, W., Hahn, M. W., Halligan, D. L., Halpern, A. L., Halter, G. M., Han, M. V., Heger, A., Hillier, L., Hinrichs, A. S., Holmes, I., Hoskins, R. A., Hubisz, M. J., Hultmark, D., Huntley, M. A., Jaffe, D. B., Jagadeeshan, S., Jeck, W. R., Johnson, J., Jones, C. D., Jordan, W. C., Karpen, G. H., Kataoka, E., Keightley, P. D., Kheradpour, P., Kirkness, E. F., Koerich, L. B., Kristiansen, K., Kudrna, D., Kulathinal, R. J., Kumar, S., Kwok, R., Lander, E., Langley, C. H., Lapoint, R., Lazzaro, B. P., Lee, S. J., Levesque, L., Li, R., Lin, C. F., Lin, M. F., Lindblad-Toh, K., Llopart, A., Long, M., Low, L., Lozovsky, E., Lu, J., Luo, M., Machado, C. A., Makalowski, W., Marzo, M., Matsuda, M., Matzkin, L., McAllister, B., McBride, C. S., McKernan, B., McKernan, K., Mendez-Lago, M., Minx, P., Mollenhauer, M. U., Montooth, K., Mount, S. M., Mu, X., Myers, E., Negre, B., Newfeld, S., Nielsen, R., Noor, M. A. F., O'Grady, P., Pachter, L., Papaceit, M., Parisi, M. J., Parisi, M., Parts, L., Pedersen, J. S., Pesole, G., Phillippy, A. M., Ponting, C. P., Pop, M., Porcelli, D., Powell, J. R., Prohaska, S., Pruitt, K., Puig, M., Quesneville, H., Ravi Ram, K., Rand, D., Rasmussen, M. D., Reed, L. K., Reenan, R., Reily, A., Remington, K. A., Rieger, T. T., Ritchie, M. G., Robin, C., Rogers, Y. H., Rohde, C., Rozas, J., Rubenfield, M. J., Ruiz, A., Russo, S., Salzberg, S. L., Sanchez-Gracia, A., Saranga, D. J., Sato, H., Schaeffer, S. W., Schatz, M. C., Schlenke, T., Schwartz, R., Segarra, C., Singh, R. S., Sirot, L., Sirota, M., Sisneros, N. B., Smith, C. D., Smith, T. F., Spieth, J., Stage, D. E., Stark, A., Stephan, W., Strausberg, R. L., Strempel, S., Sturgill, D., Sutton, G., Sutton, G. G., Tao, W., Teichmann, S., Tobari, Y. N., Tomimura, Y., Tsolas, J. M., Valente, V. L. S., Venter, E., Craig Venter, J., Vicario, S., Vieira, F. G., Vilella, A. J., Villasante, A., Walenz, B., Wang, J., Wasserman, M., Watts, T., Wilson, D., Wilson, R. K., Wing, R. A., Wolfner, M. F., Wong, A., Ka-Shu Wong, G., Wu, C. I., Wu, G., Yamamoto, D., Yang, H. P., Yang, S. P., Yorke, J. A., Yoshida, K., Zdobnov, E., Zhang, P., Zhang, Y., Zimin, A. V., Baldwin, J., Abdouelleil, A., Abdulkadir, J., Abebe, A., Abera, B., Abreu, J., Christophe Acer, S., Aftuck, L., Alexander, A., An, P., Anderson, E., Anderson, S., Arachi, H., Azer, M., Bachantsang, P., Barry, A., Bayul, T., Berlin, A., Bessette, D., Bloom, T., Blye, J., Boguslavskiy, L., Bonnet, C., Boukhgalter, B., Bourzgui, I., Brown, A., Cahill, P., Channer, S., Cheshatsang, Y., Chuda, L., Citroen, M., Collymore, A., Cooke, P., Costello, M., D'Aco, K., Daza, R., De Haan, G., Degray, S., Demaso, C., Dhargay, N., Dooley, K., Dooley, E., Doricent, M., Dorje, P., Dorjee, K., Dupes, A., Elong, R., Falk, J., Farina, A., Faro, S., Ferguson, D., Fisher, S., Foley, C. D., Franke, A., Friedrich, D., Gadbois, L., Gearin, G., Gearin, C. R., Giannoukos, G., Goode, T., Graham, J., Grandbois, E., Grewal, S., Gyaltsen, K., Hafez, N., Hagos, B., Hall, J., Henson, C., Hollinger, A., Honan, T., Huard, M. D., Hughes, L., Hurhula, B., Erii Husby, M., Kamat, A., Kanga, B., Kashin, S., Khazanovich, D., Kisner, P., Lance, K., Lara, M., Lee, W., Lennon, N., Letendre, F., Levine, R., Lipovsky, A., Liu, X., Liu, J., Liu, S., Lokyitsang, T., Lokyitsang, Y., Lubonja, R., Lui, A., MacDonald, P., Magnisalis, V., Maru, K., Matthews, C., McCusker, W., McDonough, S., Mehta, T., Meldrim, J., Meneus, L., Mihai, O., Mihalev, A., Mihova, T., Mittelman, R., Mlenga, V., Montmayeur, A., Mulrain, L., Navidi, A., Naylor, J., Negash, T., Nguyen, T., Nguyen, N., Nicol, R., Norbu, C., Norbu, N., Novod, N., O'Neill, B., Osman, S., Markiewicz, E., Oyono, O. L., Patti, C., Phunkhang, P., Pierre, F., Priest, M., Raghuraman, S., Rege, F., Reyes, R., Rise, C., Rogov, P., Ross, K., Ryan, E., Settipalli, S., Shea, T., Sherpa, N., Shi, L., Shih, D., Sparrow, T., Spaulding, J., Stalker, J., Stange-Thomann, N., Stavropoulos, S., Stone, C., Strader, C., Tesfaye, S., Thomson, T., Thoulutsang, Y., Thoulutsang, D., Topham, K., Topping, I., Tsamla, T., Vassiliev, H., Vo, A., Wangchuk, T., Wangdi, T., Weiand, M., Wilkinson, J., Wilson, A., Yadav, S., Young, G., Yu, Q., Zembek, L., Zhong, D., Zimmer, A., Zwirko, Z., Alvarez, P., Brockman, W., Butler, J., Chin, C., Grabherr, M., Kleber, M., Mauceli, E. & MacCallum, I., 8 Nov 2007, In: Nature. 450, 7167, p. 203-218 15 p.

    Research output: Contribution to journal › Article › peer-review

  • Genomic analysis of human microRNA transcripts

    Saini, H. K., Griffiths-Jones, S. & Enright, A. J., 6 Nov 2007, In: Proceedings of the National Academy of Sciences of the United States of America. 104, 45, p. 17719-17724 5 p.

    Research output: Contribution to journal › Article › peer-review

  • 2006

    miRBase: microRNA sequences, targets and gene nomenclature.

    Griffiths-Jones, S., Grocock, R. J., van Dongen, S., Bateman, A. & Enright, A. J., 1 Jan 2006, In: Nucleic acids research.. 34, p. D140-144

    Research output: Contribution to journal › Article › peer-review

  • miRBase: the microRNA sequence database.

    Griffiths-Jones, S., 2006, In: Methods in Molecular Biology. 342, p. 129-138 9 p.

    Research output: Contribution to journal › Article › peer-review

  • Pfam: clans, web tools and services.

    Finn, R. D., Mistry, J., Schuster-Böckler, B., Griffiths-Jones, S., Hollich, V., Lassmann, T., Moxon, S., Marshall, M., Khanna, A., Durbin, R., Eddy, S. R., Sonnhammer, E. L. L. & Bateman, A., 1 Jan 2006, In: Nucleic acids research.. 34, p. D247-251

    Research output: Contribution to journal › Article › peer-review

  • The DNA sequence and biological annotation of human chromosome 1

    Gregory, S. G., Barlow, K. F., McLay, K. E., Kaul, R., Swarbreck, D., Dunham, A., Scott, C. E., Howe, K. L., Woodfine, K., Spencer, C. C. A., Jones, M. C., Gillson, C., Searle, S., Zhou, Y., Kokocinski, F., McDonald, L., Evans, R., Phillips, K., Atkinson, A., Cooper, R., & 146 othersJones, C., Hall, R. E., Andrews, T. D., Lloyd, C., Ainscough, R., Almeida, J. P., Ambrose, K. D., Anderson, F., Andrew, R. W., Ashwell, R. I. S., Aubin, K., Babbage, A. K., Bagguley, C. L., Bailey, J., Beasley, H., Bethel, G., Bird, C. P., Bray-Allen, S., Brown, J. Y., Brown, A. J., Buckley, D., Burton, J., Bye, J., Carder, C., Chapman, J. C., Clark, S. Y., Clarke, G., Clee, C., Cobley, V., Collier, R. E., Corby, N., Coville, G. J., Davies, J., Deadman, R., Dunn, M., Earthrowl, M., Ellington, A. G., Errington, H., Frankish, A., Frankland, J., French, L., Garner, P., Garnett, J., Gay, L., Ghori, M. R. J., Gibson, R., Gilby, L. M., Gillett, W., Glithero, R. J., Grafham, D. V., Griffiths, C., Griffiths-Jones, S., Grocock, R., Hammond, S., Harrison, E. S. I., Hart, E., Haugen, E., Heath, P. D., Holmes, S., Holt, K., Howden, P. J., Hunt, A. R., Hunt, S. E., Hunter, G., Isherwood, J., James, R., Johnson, C., Johnson, D., Joy, A., Kay, M., Kershaw, J. K., Kibukawa, M., Kimberley, A. M., King, A., Knights, A. J., Lad, H., Laird, G., Lawlor, S., Leongamornlert, D. A., Lloyd, D. M., Loveland, J., Lovell, J., Lush, M. J., Lyne, R., Martin, S., Mashreghi-Mohammadi, M., Matthews, L., Matthews, N. S. W., McLaren, S., Milne, S., Mistry, S., Moore, M. J. F., Nickerson, T., O'Dell, C. N., Oliver, K., Palmeiri, A., Palmer, S. A., Parker, A., Patel, D., Pearce, A. V., Peck, A. I., Pelan, S., Phelps, K., Phillimore, B. J., Plumb, R., Rajan, J., Raymond, C., Rouse, G., Saenphimmachak, C., Sehra, H. K., Sheridan, E., Shownkeen, R., Sims, S., Skuce, C. D., Smith, M., Steward, C., Subramanian, S., Sycamore, N., Tracey, A., Tromans, A., Van Helmond, Z., Wall, M., Wallis, J. M., White, S., Whitehead, S. L., Wilkinson, J. E., Willey, D. L., Williams, H., Wilming, L., Wray, P. W., Wu, Z., Coulson, A., Vaudin, M., Sulston, J. E., Durbin, R., Hubbard, T., Wooster, R., Dunham, I., Carter, N. P., McVean, G., Ross, M. T., Harrow, J., Olson, M. V., Beck, S., Rogers, J. & Bentley, D. R., 18 May 2006, In: Nature. 441, 7091, p. 315-321 6 p.

    Research output: Contribution to journal › Article › peer-review

  • 2005

    A selenocysteine tRNA and SECIS element in Plasmodium falciparum

    Mourier, T., Pain, A., Barrell, B. & Griffiths-Jones, S., Feb 2005, In: RNA. 11, 2, p. 119-122 3 p.

    Research output: Contribution to journal › Article › peer-review

  • Genome of the host-cell transforming parasite Theileria annulata compared with T. parva

    Pain, A., Renauld, H., Berriman, M., Murphy, L., Yeats, C. A., Weir, W., Kerhornou, A., Aslett, M., Bishop, R., Bouchier, C., Cochet, M., Coulson, R. M. R., Cronin, A., De Villiers, E. P., Fraser, A., Fosker, N., Gardner, M., Goble, A., Griffiths-Jones, S., Harris, D. E., & 30 othersKatzer, F., Larke, N., Lord, A., Maser, P., McKellar, S., Mooney, P., Morton, F., Nene, V., O'Neil, S., Price, C., Quail, M. A., Rabbinowitsch, E., Rawlings, N. D., Rutter, S., Saunders, D., Seeger, K., Shah, T., Squares, R., Squares, S., Tivey, A., Walker, A. R., Woodward, J., Dobbelaere, D. A. E., Langsley, G., Rajandream, M. A., McKeever, D., Shiels, B., Tait, A., Barrell, B. & Hall, N., 1 Jul 2005, In: Science. 309, 5731, p. 131-133 2 p.

    Research output: Contribution to journal › Article › peer-review

  • RALEE - RNA alignment editor in Emacs

    Griffiths-Jones, S., 15 Jan 2005, In: Bioinformatics. 21, 2, p. 257-259 2 p.

    Research output: Contribution to journal › Article › peer-review

  • Rfam: Annotating non-coding RNAs in complete genomes

    Griffiths-Jones, S., Moxon, S., Marshall, M., Khanna, A., Eddy, S. R. & Bateman, A., 1 Jan 2005, In: Nucleic acids research.. 33, p. D121-D124

    Research output: Contribution to journal › Article › peer-review

  • Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

    Galagan, J. E., Calvo, S. E., Cuomo, C., Ma, L. J., Wortman, J. R., Batzoglou, S., Lee, S. I., Baştürkmen, M., Spevak, C. C., Clutterbuck, J., Kapitonov, V., Jurka, J., Scazzocchio, C., Farman, M., Butler, J., Purcell, S., Harris, S., Braus, G. H., Draht, O., Busch, S., & 30 othersD'Enfert, C., Bouchier, C., Goldman, G. H., Bell-Pedersen, D., Griffiths-Jones, S., Doonan, J. H., Yu, J., Vienken, K., Pain, A., Freitag, M., Selker, E. U., Archer, D. B., Peñalva, M. Á., Oakley, B. R., Momany, M., Tanaka, T., Kumagai, T., Asai, K., Machida, M., Nierman, W. C., Denning, D. W., Caddick, M., Hynes, M., Paoletti, M., Fischer, R., Miller, B., Dyer, P., Sachs, M. S., Osmani, S. A. & Birren, B. W., 22 Dec 2005, In: Nature. 438, 7071, p. 1105-1115 10 p.

    Research output: Contribution to journal › Article › peer-review

  • Structural relatedness of plant food allergens with specific reference to cross-reactive allergens: An in silico analysis

    Jenkins, J. A., Griffiths-Jones, S., Shewry, P. R., Breiteneder, H. & Mills, E. N. C., Jan 2005, In: Journal of Allergy and Clinical Immunology. 115, 1, p. 163-170 7 p.

    Research output: Contribution to journal › Article › peer-review

  • Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags

    Hubbard, S. J., Grafham, D. V., Beattie, K. J., Overton, I. M., McLaren, S. R., Croning, M. D. R., Boardman, P. E., Bonfield, J. K., Burnside, J., Davies, R. M., Farrel, E. R., Francis, M. D., Griffiths-Jones, S., Humphray, S. J., Hyland, C., Scott, C. E., Tang, H., Taylor, R. G., Tickle, C., Brown, W. R. A., & 3 othersBirney, E., Rogers, J. & Wilson, S. A., Jan 2005, In: Genome research. 15, 1, p. 174-183 9 p.

    Research output: Contribution to journal › Article › peer-review

  • 2004

    DNA sequence and analysis of human chromosome 9

    Humphray, S. J., Oliver, K., Hunt, A. R., Plumb, R. W., Loveland, J. E., Howe, K. L., Andrews, T. D., Searle, S., Hunt, S. E., Scott, C. E., Jones, M. C., Ainscough, R., Almeida, J. P., Ambrose, K. D., Ashwell, R. I. S., Babbage, A. K., Babbage, S., Bagguley, C. L., Bailey, J., Banerjee, R., & 128 othersBarker, D. J., Barlow, K. F., Bates, K., Beasley, H., Beasley, O., Bird, C. P., Bray-Allen, S., Brown, A. J., Brown, J. Y., Burford, D., Burrill, W., Burton, J., Carder, C., Carter, N. P., Chapman, J. C., Chen, Y., Clarke, G., Clark, S. Y., Clee, C. M., Clegg, S., Collier, R. E., Corby, N., Crosier, M., Cummings, A. T., Davies, J., Dhami, P., Dunn, M., Dutta, I., Dyer, L. W., Earthrowl, M. E., Faulkner, L., Fleming, C. J., Frankish, A., Frankland, J. A., French, L., Fricker, D. G., Garner, P., Garnett, J., Ghori, J., Gilbert, J. G. R., Glison, C., Grafham, D. V., Gribble, S., Griffiths, C., Griffiths-Jones, S., Grocock, R., Guy, J., Hall, R. E., Hammond, S., Harley, J. L., Harrison, E. S. I., Hart, E. A., Heath, P. D., Henderson, C. D., Hopkins, B. L., Howard, P. J., Howden, P. J., Huckle, E., Johnson, C., Johnson, D., Joy, A. A., Kay, M., Keenan, S., Kershaw, J. K., Kimberley, A. M., King, A., Knights, A., Laird, G. K., Langford, C., Lawlor, S., Leongamornlert, D. A., Leversha, M., Lloyd, C., Lloyd, D. M., Lovell, J., Martin, S., Mashreghi-Mohammadi, M., Matthews, L., McLaren, S., McLay, K. E., McMurray, A., Milne, S., Nickerson, T., Nisbett, J., Nordsiek, G., Pearce, A. V., Peck, A. I., Porter, K. M., Pandian, R., Pelan, S., Phillimore, B., Povey, S., Ramsey, Y., Rand, V., Scharfe, M., Sehra, H. K., Shownkeen, R., Sims, S. K., Skuce, C. D., Smith, M., Steward, C. A., Swarbreck, D., Sycamore, N., Tester, J., Thorpe, A., Tracey, A., Tromans, A., Thomas, D. W., Wall, M., Wallis, J. M., West, A. P., Whitehead, S. L., Willey, D. L., Williams, S. A., Wilming, L., Wray, P. W., Young, L., Ashurst, J. L., Coulson, A., Blöcker, H., Durbin, R., Sulston, J. E., Hubbard, T., Jackson, M. J., Bentley, D. R., Beck, S., Rogers, J. & Dunham, I., 27 May 2004, In: Nature. 429, 6990, p. 369-374 5 p.

    Research output: Contribution to journal › Article › peer-review

  • Finishing the euchromatic sequence of the human genome

    Bensasson, D., Griffiths-Jones, S., Collins, F. S., Lander, E. S., Rogers, J. & Waterson, R. H., 21 Oct 2004, In: Nature. 431, 7011, p. 931-945 14 p.

    Research output: Contribution to journal › Article › peer-review

  • Identification of mammalian microRNA host genes and transcription units

    Rodriguez, A., Griffiths-Jones, S., Ashurst, J. L. & Bradley, A., Oct 2004, In: Genome research. 14, 10 A, p. 1902-1910 8 p.

    Research output: Contribution to journal › Article › peer-review

  • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

    Griffiths-Jones, S. & Hubbard, S., 9 Dec 2004, In: Nature. 432, 7018, p. 695-716 21 p.

    Research output: Contribution to journal › Article › peer-review

  • The DNA sequence and analysis of human chromosome 13

    Dunham, A., Matthews, L. H., Burton, J., Ashurst, J. L., Howe, K. L., Ashcroft, K. J., Beare, D. M., Burford, D. C., Hunt, S. E., Griffiths-Jones, S., Jones, M. C., Keenan, S. J., Oliver, K., Scott, C. E., Ainscough, R., Almeida, J. P., Ambrose, K. D., Andrews, D. T., Ashwell, R. I. S., Babbage, A. K., & 106 othersBagguley, C. L., Bailey, J., Bannerjee, R., Barlow, K. F., Bates, K., Beasley, H., Bird, C. P., Bray-Allen, S., Brown, A. J., Brown, J. Y., Burrill, W., Carder, C., Carter, N. P., Chapman, J. C., Clamp, M. E., Clark, S. Y., Clarke, G., Clee, C. M., Clegg, S. C. M., Cobley, V., Collins, J. E., Corby, N., Coville, G. J., Deloukas, P., Dhami, P., Dunham, I., Dunn, M., Earthrowl, M. E., Ellington, A. G., Faulkner, L., Frankish, A. G., Frankland, J., French, L., Garner, P., Garnett, J., Gilbert, J. G. R., Gilson, C. J., Ghori, J., Grafham, D. V., Gribble, S. M., Griffiths, C., Hall, R. E., Hammond, S., Harley, J. L., Hart, E. A., Heath, P. D., Howden, P. J., Huckle, E. J., Hunt, P. J., Hunt, A. R., Johnson, C., Johnson, D., Kay, M., Kimberley, A. M., King, A., Laird, G. K., Langford, C. J., Lawlor, S., Leongamornlert, D. A., Lloyd, D. M., Lloyd, C., Loveland, J. E., Lovell, J., Martin, S., Mashreghi-Mohammadi, M., McLaren, S. J., McMurray, A., Milne, S., Moore, M. J. F., Nickerson, T., Palmer, S. A., Pearce, A. V., Peck, A. I., Pelan, S., Phillimore, B., Porter, K. M., Rice, C. M., Searle, S., Sehra, H. K., Shownkeen, R., Skuce, C. D., Smith, M., Steward, C. A., Sycamore, N., Tester, J., Thomas, D. W., Tracey, A., Tromans, A., Tubby, B., Wall, M., Wallis, J. M., West, A. P., Whitehead, S. L., Willey, D. L., Wilming, L., Wray, P. W., Wright, M. W., Young, L., Coulson, A., Durbin, R., Hubbard, T., Sulston, J. E., Beck, S., Bentley, D. R., Rogers, J. & Ross, M. T., 1 Apr 2004, In: Nature. 428, 6982, p. 522-528 6 p.

    Research output: Contribution to journal › Article › peer-review

  • The microRNA registry

    Griffiths-Jones, S., 1 Jan 2004, In: Nucleic acids research.. 32, p. D109-D111

    Research output: Contribution to journal › Article › peer-review

  • The Pfam protein families database

    Bateman, A., Coin, L., Durbin, R., Finn, R. D., Hollich, V., Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S., Sonnhammer, E. L. L., Studholme, D. J., Yeats, C. & Eddy, S. R., 1 Jan 2004, In: Nucleic acids research.. 32, p. D138-D141

    Research output: Contribution to journal › Article › peer-review

    Open Access
  • 2003

    A uniform system for microRNA annotation

    Ambros, V., Bartel, B., Bartel, D. P., Burge, C. B., Carrington, J. C., Chen, X., Dreyfuss, G., Eddy, S. R., Griffiths-Jones, S., Marshall, M., Matzke, M., Ruvkun, G. & Tuschl, T., 1 Mar 2003, In: RNA. 9, 3, p. 277-279 2 p.

    Research output: Contribution to journal › Article › peer-review

  • Rfam: An RNA family database

    Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A. & Eddy, S. R., 1 Jan 2003, In: Nucleic acids research.. 31, 1, p. 439-441 2 p.

    Research output: Contribution to journal › Article › peer-review

  • The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics

    Stein, L. D., Bao, Z., Blasiar, D., Blumenthal, T., Brent, M. R., Chen, N., Chinwalla, A., Clarke, L., Clee, C., Coghlan, A., Coulson, A., D'Eustachio, P., Fitch, D. H. A., Fulton, L. A., Fulton, R. E., Griffiths-Jones, S., Harris, T. W., Hillier, L. W., Kamath, R., Kuwabara, P. E., & 16 othersMardis, E. R., Marra, M. A., Miner, T. L., Minx, P., Mullikin, J. C., Plumb, R. W., Rogers, J., Schein, J. E., Sohrmann, M., Spieth, J., Stajich, J. E., Wei, C., Willey, D., Wilson, R. K., Durbin, R. & Waterston, R. H., 2003, In: PLoS Biology. 1, 2

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • The InterPro database, 2003 brings increased coverage and new features

    Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A., Barrell, D., Bateman, A., Binns, D., Biswas, M., Bradley, P., Bork, P., Bucher, P., Copley, R. R., Courcelle, E., Das, U., Durbin, R., Falquet, L., Fleischmann, W., Griffiths-Jones, S., Haft, D., Harte, N., & 17 othersHulo, N., Kahn, D., Kanapin, A., Krestyaninova, M., Lopez, R., Letunic, I., Lonsdale, D., Silventoinen, V., Orchard, S. E., Pagni, M., Peyruc, D., Ponting, C. P., Selengut, J. D., Servant, F., Sigrist, C. J. A., Vaughan, R. & Zdobnov, E. M., 1 Jan 2003, In: Nucleic acids research.. 31, 1, p. 315-318 3 p.

    Research output: Contribution to journal › Article › peer-review

  • 2002

    InterPro: an integrated documentation resource for protein families, domains and functional sites.

    Griffiths-Jones, S., Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Binns, D., Biswas, M., Bradley, P., Bork, P., Bucher, P., Copley, R., Courcelle, E., Durbin, R., Falquet, L., Fleischmann, W., Gouzy, J., Griffith-Jones, S., Haft, D., Hermjakob, H., & 12 othersHulo, N., Kahn, D., Kanapin, A., Krestyaninova, M., Lopez, R., Letunic, I., Orchard, S., Pagni, M., Peyruc, D., Ponting, C. P., Servant, F. & Sigrist, C. J. A., Sept 2002, In: Briefings in Bioinformatics. 3, 3, p. 225-235 10 p.

    Research output: Contribution to journal › Article › peer-review

  • Plant protein families and their relationships to food allergy

    Shewry, P. R., Beaudoin, F., Jenkins, J., Griffiths-Jones, S. & Mills, E. N. C., Nov 2002, In: Biochemical Society Transactions. 30, 6, p. 906-910 4 p.

    Research output: Contribution to journal › Article › peer-review

  • The pfam protein families database

    Bateman, A., Birney, E., Cerruti, L., Durbin, R., Etwiller, L., Eddy, S. R., Griffiths-Jones, S., Howe, K. L., Marshall, M. & Sonnhammer, E. L. L., 1 Jan 2002, In: Nucleic acids research.. 30, 1, p. 276-280 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs

    Griffiths-Jones, S. & Bateman, A., Sept 2002, In: Bioinformatics. 18, 9, p. 1243-1249 6 p.

    Research output: Contribution to journal › Article › peer-review

  • 2001

    Effects of amino acid φ, ψ propensities and secondary structure interactions in modulating Hα chemical shifts in peptide and protein β-sheet

    Sharman, G. J., Griffiths-Jones, S. R., Jourdan, M. & Searle, M. S., 12 Dec 2001, In: Journal of the American Chemical Society. 123, 49, p. 12318-12324 6 p.

    Research output: Contribution to journal › Article › peer-review

  • 2000

    Do interstrand hydrogen bonds contribute to beta-hairpin peptide stability in solution? IR analysis of peptide folding in water

    Colley, CS., Griffiths-Jones, SR., George, MW. & Searle, MS., 2000, In: Chemical Communications. 7

    Research output: Contribution to journal › Article › peer-review

  • Folding of a β-hairpin peptide derived from the N-terminus of ubiquitin: Conformational preferences of β-turn residues dictate non-native β-strand interactions

    Jourdan, M., Griffiths-Jones, S. R. & Searle, M. S., 2000, In: European Journal of Biochemistry. 267, 12, p. 3539-3548 9 p.

    Research output: Contribution to journal › Article › peer-review

  • Steady state and time-resolved IR spectroscopy of the native and unfolded states of bovine ubiquitin: Protein stability and temperature-jump kinetic measurements of protein folding at low pH

    Colley, C. S., Clark, I. P., Griffiths-Jones, S. R., George, M. W. & Searle, M. S., 21 Aug 2000, In: Chemical Communications. 16, p. 1493-1494 1 p.

    Research output: Contribution to journal › Article › peer-review

  • Structure, folding, and energetics of cooperative interactions between the beta-strands of a de novo sesigned three-stranded antiparallel beta-sheet peptide

    Griffiths-Jones, SR. & Searle, MS., 2000, In: Journal of the American Chemical Society. 122, 35

    Research output: Contribution to journal › Article › peer-review

  • 1999

    Dissecting the stability of a β-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the β-turn and β-strand contributions to folding

    Griffiths-Jones, S. R., Maynard, A. J. & Searle, M. S., 8 Oct 1999, In: Journal of molecular biology. 292, 5, p. 1051-1069 18 p.

    Research output: Contribution to journal › Article › peer-review

  • Energetics of weak interactions in a β-hairpin peptide: Electrostatic and hydrophobic contributions to stability from lysine salt bridges

    Searle, M. S., Griffiths-Jones, S. R. & Skinner-Smith, H., 22 Dec 1999, In: Journal of the American Chemical Society. 121, 50, p. 11615-11620 5 p.

    Research output: Contribution to journal › Article › peer-review

  • 1998

    Modulation of intrinsic φ,ψ propensities of amino acids by neighbouring residues in the coil regions of protein structures: NMR analysis and dissection of a β-hairpin peptide

    Griffiths-Jones, S. R., Sharman, G. J., Maynard, A. J. & Searle, M. S., 18 Dec 1998, In: Journal of molecular biology. 284, 5, p. 1597-1609 12 p.

    Research output: Contribution to journal › Article › peer-review

  • NMR evidence for the nucleation of a beta-hairpin peptide conformation in water by an Asn-Gly type I' beta-turn sequence

    Griffiths-Jones, SR., Maynard, AJ., Sharman, GJ. & Searle, MS., 1998, In: Chemical Communications. 7

    Research output: Contribution to journal › Article › peer-review