Terri Attwood

Rustici, G., Larcombe-McDouall, J. B., Hendricusdottir, R., Attwood, T. K., Bacall, F., Beard, N., Bellis, L. J., Dunn, W. B., Hancock, J. M., Nenadic, A., Orengo, C., Overduin, B., Sansone, S. A., Thurston, M., Viant, M. R., Winder, C. L., Goble, C. A. & Ponting, C. P., 21 Jul 2017, In: F1000Research. 6, 952.

Research output: Contribution to journal › Article › peer-review

Open Access

InterPro in 2017-beyond protein family and domain annotations

Finn, R. D., Attwood, T. K., Babbitt, P. C., Bateman, A., Bork, P., Bridge, A. J., Chang, H.-Y., Dosztányi, Z., El-Gebali, S., Fraser, M., Gough, J., Haft, D., Holliday, G. L., Huang, H., Huang, X., Letunic, I., Lopez, R., Lu, S., Marchler-Bauer, A. & Mi, H. & 27 others, Mistry, J., Natale, D. A., Necci, M., Nuka, G., Orengo, C. A., Park, Y., Pesseat, S., Piovesan, D., Potter, S. C., Rawlings, N. D., Redaschi, N., Richardson, L., Rivoire, C., Sangrador-Vegas, A., Sigrist, C., Sillitoe, I., Smithers, B., Squizzato, S., Sutton, G., Thanki, N., Thomas, P. D., Tosatto, S. C. E., Wu, C. H., Xenarios, I., Yeh, L.-S., Young, S.-Y. & Mitchell, A. L., 4 Jan 2017, In: Nucleic acids research. 45, D1, p. D190-D199

Research output: Contribution to journal › Article › peer-review

Open Access

Plug gap in essential bioinformatics skills

Brazas, M. D., Blackford, S. & Attwood, T., 2017, In: Nature. 544

Research output: Contribution to journal › Letter › peer-review

Open Access

File

139 Downloads (Pure)

The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: Empower researchers to deliver high-quality training

Morgan, S. L., Palagi, P. M., Fernandes, P. L., Koperlainen, E., Dimec, J., Marek, D., Larcombe, L., Rustici, G., Attwood, T. K. & Via, A., 24 Aug 2017, In: F1000Research. 6, 1557.

Research output: Contribution to journal › Article › peer-review

Open Access

2016

Bioinformatics challenges at the interface of biology and computer science: Mind the gap

Attwood, T., Pettifer, S. R. & Thorne, D., 2016, John Wiley & Sons Ltd.

Research output: Book/Report › Book › peer-review

Defining a lingua franca for the ELIXIR/GOBLET e-learning ecosystem

Attwood, T., 13 Nov 2016, 22 p. Zenodo.

Research output: Other contribution

Open Access

2015

An open science peer review oath.

Aleksic, J., Alexa, A., Attwood, T., Chue, H. N., Dahlö, M., Davey, R., Dinkel, H., Förstner, K., Grigorov, I., Hériché, J., Lahti, L., MacLean, D., Markie, M., Molloy, J., Schneider, M., Scott, C., Smith-Unna, R. & Vieira, B., 2015, In: F1000Research. 3, p. 271

Research output: Contribution to journal › Article › peer-review

GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training

Attwood, T., Bongcam-Rudloff, E., Brazas, M., Corpas, M., Gaudet, P., Lewitter, F., Mulder, N., Palagi, P., Schneider, M., van, G. C. & GOBLET Consortium, 2015, In: P L o S Computational Biology (Online). 11, 4, e1004143.

Research output: Contribution to journal › Article › peer-review

Longevity of biological databases

Attwood, T., Agit, B. & Ellis, L., 2015, In: EMBnet.journal. 21

Research output: Contribution to journal › Article › peer-review

The InterPro protein families database: the classification resource after 15 years.

Mitchell, A., Chang, H., Daugherty, L., Fraser, M., Hunter, S., Lopez, R., McAnulla, C., McMenamin, C., Nuka, G., Pesseat, S., Sangrador-Vegas, A., Scheremetjew, M., Rato, C., Yong, S., Bateman, A., Punta, M., Attwood, T., Sigrist, C., Redaschi, N. & Rivoire, C. & 16 others, Xenarios, I., Kahn, D., Guyot, D., Bork, P., Letunic, I., Gough, J., Oates, M., Haft, D., Huang, H., Natale, D., Wu, C., Orengo, C., Sillitoe, I., Mi, H., Thomas, P. & Finn, R., 2015, In: Nucleic acids research. 43, p. D213-D221

Research output: Contribution to journal › Article › peer-review

2014

Completing the structural family portrait of the human EphB tyrosine kinase domains

Overman, R. C., Debreczeni, J. E., Truman, C. M., McAlister, M. S. & Attwood, T. K., 2014, In: Protein science. 23, 5, p. 627-638 11 p.

Research output: Contribution to journal › Article › peer-review

Concise Encyclopaedia of Bioinformatics & Computational Biology, 2nd Edition

Attwood, T., Hancock, J. (Editor) & Zvelebil, M. (Editor), 2014, Concise Encyclopaedia of Bioinformatics & Computational Biology: 2nd Edition. John Wiley & Sons Ltd

Research output: Chapter in Book/Report/Conference proceeding › Entry for encyclopedia/dictionary

GOBLET: achievements and goals a year on

Attwood, T., Blackford, S., Brazas, M., Brooksbank, C., Budd, A., Corpas, M., Davies, A., Fatumo, S., Fernandes, P., Gaudet, P., Hayer, J., Jimenez, R., Korpelainen, E., Kumuthini, J., Maclean, D., McGrath, A., Orengo, C., Palagi, P., Ponting, C. & Sansone, S. & 6 others, Schneider, M., Schonbach, C., Taylor, J., van, G. C., Vriend, G. & GOBLET Consortium, 2014, In: EMBnet.journal. 20

Research output: Contribution to journal › Article › peer-review

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Corpas, M., Jimenez, R., Bongcam-Rudloff, E., Budd, A., Brazas, M., Fernandes, P., Gaeta, B., van, G. C., Korpelainen, E., Lewitter, F., McGrath, A., MacLean, D., Palagi, P., Rother, K., Taylor, J., Via, A., Watson, M., Schneider, M. & Attwood, T., 4 Sept 2014, In: Bioinformatics. 31, 1, pii: btu601.

Research output: Contribution to journal › Article › peer-review

2013

Best practices in bioinformatics training for life scientists

Via, A., Blicher, T., Bongcam-Rudloff, E., Brazas, M. D., Brooksbank, C., Budd, A., De Las Rivas, J., Dreyer, J., Fernandes, P. L., Van Gelder, C., Jacob, J., Jimenez, R. C., Loveland, J., Moran, F., Mulder, N., Nyrönen, T., Rother, K., Schneider, M. V. & Attwood, T. K., 2013, In: Briefings in Bioinformatics. 14, 5, p. 528-537 9 p., bbt043.

Research output: Contribution to journal › Article › peer-review

Biochemical and biophysical characterisation of four EphB kinase domains reveals contrasting thermodynamic, kinetic and inhibition profiles

Overman, R., Debreczeni, J., Truman, C., McAlister, M. & Attwood, T., 2013, In: Biosci. Rep.. 33, 3

Research output: Contribution to journal › Article › peer-review

IAnn: An event sharing platform for the life sciences

Jimenez, R. C., Albar, J. P., Bhak, J., Blatter, M. C., Blicher, T., Brazas, M. D., Brooksbank, C., Budd, A., De Las Rivas, J., Dreyer, J., Van Driel, M. A., Dunn, M. J., Fernandes, P. L., Van Gelder, C. W. G., Hermjakob, H., Ioannidis, V., Judge, D. P., Kahlem, P., Korpelainen, E. & Kraus, H. J. & 15 others, Loveland, J., Mayer, C., McDowall, J., Moran, F., Mulder, N., Nyronen, T., Rother, K., Salazar, G. A., Schneider, R., Via, A., Villaveces, J. M., Yu, P., Schneider, M. V., Attwood, T. K. & Corpas, M., 1 Aug 2013, In: Bioinformatics. 29, 15, p. 1919-1921 2 p.

Research output: Contribution to journal › Article › peer-review

Stability and solubility engineering of the EphB4 receptor tyrosine kinase catalytic domain.

Overman, R., Green, I., Truman, C., Read, J., Embrey, K., McAlister, M. & Attwood, T., 2013, In: Protein Eng. Des. Sel..

Research output: Contribution to journal › Article › peer-review

2012

Biocurators and biocuration: Surveying the 21st century challenges

Burge, S., Attwood, T. K., Bateman, A., Berardini, T. Z., Cherry, M., O'Donovan, C., Xenarios, L. & Gaudet, P., 2012, In: Database. 2012, bar059.

Research output: Contribution to journal › Article › peer-review

Bioinformatics training network (BTN): A community resource for bioinformatics trainers: A community resource for bioinformatics trainers

Schneider, M. V., Walter, P., Blatter, M. C., Watson, J., Brazas, M. D., Rother, K., Budd, A., Via, A., van Gelder, C. W. G., Jacob, J., Fernandes, P., Nyrönen, T. H., De Las Rivas, J., Blicher, T., Jimenez, R. C., Loveland, J., McDowall, J., Jones, P., Vaughan, B. W. & Lopez, R. & 2 others, Attwood, T. K. & Brooksbank, C., May 2012, In: Briefings in Bioinformatics. 13, 3, p. 383-389 6 p., bbr064.

Research output: Contribution to journal › Article › peer-review

Open Access

Implementation of proteomic biomarkers: Making it work

Mischak, H., Ioannidis, J. P. A., Argiles, A., Attwood, T. K., Bongcam-Rudloff, E., Broenstrup, M., Charonis, A., Chrousos, G. P., Delles, C., Dominiczak, A., Dylag, T., Ehrich, J., Egido, J., Findeisen, P., Jankowski, J., Johnson, R. W., Julien, B. A., Lankisch, T., Leung, H. Y. & Maahs, D. & 17 others, Magni, F., Manns, M. P., Manolis, E., Mayer, G., Navis, G., Novak, J., Ortiz, A., Persson, F., Peter, K., Riese, H. H., Rossing, P., Sattar, N., Spasovski, G., Thongboonkerd, V., Vanholder, R., Schanstra, J. P. & Vlahou, A., Sept 2012, In: European Journal of Clinical Investigation. 42, 9, p. 1027-1036 9 p.

Research output: Contribution to journal › Article › peer-review

InterPro in 2011: New developments in the family and domain prediction database

Hunter, S., Jones, P., Mitchell, A., Apweiler, R., Attwood, T. K., Bateman, A., Bernard, T., Binns, D., Bork, P., Burge, S., De Castro, E., Coggill, P., Corbett, M., Das, U., Daugherty, L., Duquenne, L., Finn, R. D., Fraser, M., Gough, J. & Haft, D. & 30 others, Hulo, N., Kahn, D., Kelly, E., Letunic, I., Lonsdale, D., Lopez, R., Madera, M., Maslen, J., McAnulla, C., McDowall, J., McMenamin, C., Mi, H., Mutowo-Muellenet, P., Mulder, N., Natale, D., Orengo, C., Pesseat, S., Punta, M., Quinn, A. F., Rivoire, C., Sangrador-Vegas, A., Selengut, J. D., Sigrist, C. J. A., Scheremetjew, M., Tate, J., Thimmajanarthanan, M., Thomas, P. D., Wu, C. H., Yeats, C. & Yong, S. Y., Jan 2012, In: Nucleic acids research.. 40, 1, p. D306-D312

Research output: Contribution to journal › Article › peer-review

NucleaRDB: Information system for nuclear receptors

Vroling, B., Thorne, D., McDermott, P., Joosten, H. J., Attwood, T. K., Pettifer, S. & Vriend, G., Jan 2012, In: Nucleic acids research.. 40, 1, p. D377-D380

Research output: Contribution to journal › Article › peer-review

Reuniting data and narrative in scientific articles

Pettifer, S., Velterop, J., Attwood, T. K., Harland, L., Marsh, J., Thorne, D. & Tunbridge, A., Nov 2012, In: Insights: the UKSG Journal (Online) . 25, 3, p. 288-293 5 p.

Research output: Contribution to journal › Article › peer-review

The PRINTS database: A fine-grained protein sequence annotation and analysis resource-its status in 2012

Attwood, T. K., Coletta, A., Muirhead, G., Pavlopoulou, A., Philippou, P. B., Popov, I., Romá-Mateo, C., Theodosiou, A. & Mitchell, A. L., 2012, In: Database. 2012, bas019.

Research output: Contribution to journal › Article › peer-review

Utopia Documents: Transforming how industrial scientists interact with the scientific literature

Pettifer, S., Attwood, T., Marsh, J. & Thorne, D., Oct 2012, Open Source Software in Life Science Research: Practical Solutions to Common Challenges in the Pharmaceutical Industry and Beyond|Open Source Softw. in Life Sci. Res.: Pract. Solut. to Common Chall. in the Pharma. Ind. and Beyond: Practical solutions to common challenges in the pharmaceutical industry and beyond. Woodhead Publishing Series in Biomedicine, No.16: Elsevier BV, p. 351-365 14 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2011

Ceci n'est pas un hamburger: Modelling and representing the scholarly article

Pettifer, S., Mcdermott, P., Marsh, J., Thorne, D., Villeger, A. & Attwood, T. K., Jul 2011, In: Learned Publishing. 24, 3, p. 207-220 13 p.

Research output: Contribution to journal › Article › peer-review

Concepts, historical milestones and the central place of bioinformatics in modern biology: A european perspective

Attwood, T., Gisel, A., Eriksson, N., Bongcam-Rudloff, E. & Mahdavi, M. A. (Editor), 2011, Bioinformatics - Trends and Methodologies. IntechOpen

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Concepts, historical milestones and the central place of bioinformatics in modern biology: a European perspective.

Attwood, T. K., Gisel, A., Eriksson, N.-E. & Bongcam-Rudloff, E., Nov 2011, Bioinformatics : Trends and Methodologies. Rijecka, Croatia: IntechOpen, p. 3-38 36 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Integrating GPCR-specific information with full text articles

Vroling, B., Thorne, D., McDermott, P., Attwood, T. K., Vriend, G. & Pettifer, S., 12 Sept 2011, In: BMC Bioinformatics. 12, 362.

Research output: Contribution to journal › Article › peer-review

MINOTAUR – a Web-based annotator assistant tool. I

Mitchell, A. L., Selimas, I. & Attwood, T. K., 2011, In: International Journal of Systems Biology and Biomedical Technologies.

Research output: Contribution to journal › Article › peer-review

Promoting Interoperability of Resources in META-SHARE

Thompson, P., Kano, Y., McNaught, J., Pettifer, S., Attwood, T., Keane, J. & Ananiadou, S., 2011, IJCNLP 2011 Proceedings of the Workshop on Language Resources,Technology and Services in the Sharing Paradigm. N, C., T, I., S, P. & V, S. (eds.). Asian Federation of Natural Language Processing, p. 50-58 9 p.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Ten Simple Rules for Developing a Short Bioinformatics Training Course

Via, A., de Las Rivas, J., Attwood, T. K., Landsman, D., Brazas, M. D., Leunissen, J. A. M., Tramontano, A. & Schneider, M. V., 27 Oct 2011, In:  PLoS Computational Biology. 7, 10, e1002245.

Research output: Contribution to journal › Article › peer-review

Towards BioDBcore: A community-defined information specification for biological databases

Gaudet, P., Bairoch, A., Field, D., Sansone, S. A., Taylor, C., Attwood, T. K., Bateman, A., Blake, J. A., Bult, C. J., Cherry, J. M., Chisholm, R. L., Cochrane, G., Cook, C. E., Eppig, J. T., Galperin, M. Y., Gentleman, R., Goble, C. A., Gojobori, T., Hancock, J. M. & Howe, D. G. & 18 others, Imanishi, T., Kelso, J., Landsman, D., Lewis, S. E., Karsch-Mizrachi, I., Orchard, S., Ouellette, B. F. F., Ranganathan, S., Richardson, L., Rocca-Serra, P., Schofield, P. N., Smedley, D., Southan, C., Tan, T. W., Tatusova, T., Whetzel, P. L., White, O. & Yamasaki, C., Jan 2011, In: Nucleic acids research.. 39, 1, p. -D10

Research output: Contribution to journal › Article › peer-review

Towards Interoperability of European Language Resources

Ananiadou, S., Thompson, P., Kano, Y., McNaught, J., Attwood, T., Day, P. J. R., Keane, J., Jackson, D. & Pettifer, S., Jul 2011, In: Ariadne. 67

Research output: Contribution to journal › Article › peer-review

2010

Bioinformatics training: A review of challenges, actions and support requirements

Schneider, M. V., Watson, J., Attwood, T., Rother, K., Budd, A., McDowall, J., Via, A., Fernandes, P., Nyronen, T., Blicher, T., Jones, P., Blatter, M. C., de Las Rivas, J., Judge, D. P., van der Gool, W. & Brooksbank, C., Nov 2010, In: Briefings in Bioinformatics. 11, 6, p. 544-551 7 p., bbq021.

Research output: Contribution to journal › Article › peer-review

Low-complexity regions within protein sequences have position-dependent roles

Coletta, A., Pinney, J. W., Solís, D. Y. W., Marsh, J., Pettifer, S. R. & Attwood, T. K., 23 Apr 2010, In: BMC Systems Biology. 4, 43.

Research output: Contribution to journal › Article › peer-review

Recommendations for biomarker identification and qualification in clinical proteomics

Mischak, H., Allmaier, G., Apweiler, R., Attwood, T., Baumann, M., Benigni, A., Bennett, S. E., Bischoff, R., Bongcam-Rudloff, E., Capasso, G., Coon, J. J., D'Haese, P., Dominiczak, A. F., Dakna, M., Dihazi, H., Ehrich, J. H., Fernandez-Llama, P., Fliser, D., Frokiaer, J. & Garin, J. & 29 others, Girolami, M., Hancock, W. S., Haubitz, M., Hochstrasser, D., Holman, R. R., Ioannidis, J. P. A., Jankowski, J., Julian, B. A., Klein, J. B., Kolch, W., Luider, T., Massy, Z., Mattes, W. B., Molina, F., Monsarrat, B., Novak, J., Peter, K., Rossing, P., Sánchez-Carbayo, M., Schanstra, J. P., Semmes, O. J., Spasovski, G., Theodorescu, D., Thongboonkerd, V., Vanholder, R., Veenstra, T. D., Weissinger, E., Yamamoto, T. & Vlahou, A., 25 Aug 2010, In: Science Translational Medicine. 2, 46, 46ps42.

Research output: Contribution to journal › Article › peer-review

The EMBRACE web service collection

Pettifer, S., Ison, J., Kalaš, M., Thorne, D., McDermott, P., Jonassen, I., Liaquat, A., Fernández, J. M., Rodriguez, J. M., Pisano, D. G., Blanchet, C., Uludag, M., Rice, P., Bartaseviciute, E., Rapacki, K., Hekkelman, M., Sand, O., Stockinger, H., Clegg, A. B. & Bongcam-Rudloff, E. & 5 others, Salzemann, J., Breton, V., Attwood, T. K., Cameron, G. & Vriend, G., 12 May 2010, In: Nucleic acids research.. 38, 2, p. W683-W688 gkq297.

Research output: Contribution to journal › Article › peer-review

Utopia documents: Linking scholarly literature with research data

Attwood, T. K., Kell, D. B., McDermott, P., Marsh, J., Pettifer, S. R. & Thorne, D., 4 Sept 2010, In: Bioinformatics. 26, 18, p. 568-574 6 p., btq383.

Research output: Contribution to journal › Article › peer-review

WIWS: A protein structure bioinformatics web service collection

Hekkelman, M. L., te Beek, T. A. H., Pettifer, S. R., Thorne, D., Attwood, T. K. & Vriend, G., 25 May 2010, In: Nucleic acids research.. 38, 2, p. W719-W723 gkq453.

Research output: Contribution to journal › Article › peer-review

2009

2nd combined working group and management committee meeting of urine and kidney proteomics COST action 29-30 March 2009, Nafplio, Greece

Vlahou, A., Allmaier, G., Bongcam-Rudloff, E., Charonis, A., Mischak, H., Spasovski, G., Aasberg, A., Allory, Y., Arthur, J., Attwood, T., Banks, R., Baumann, M., Benigni, A., Bezerianos, A., Campistol, J. M., Candiano, G., Capasso, G., Carpentier, S., Dadlez, M. & Deltas, C. & 78 others, Dijilianov, D., De Zeeuw, D., Decramer, S., Dihazi, H., Domon, B., Endlich, N., d'Alche-Buc, F., D'Haese, P., Edelman, A., Egido, J., El Nahas, M., Farinazzo, A., Fernandez-Llama, P., Feldt-Rasmussen, B., Frokiaer, J., Gansevoort, R., Garbis, S., Garin, J., Ghiggeri, G. M., Gimenez, I., Granier, C., Goumenos, D., Haylor, J. L., Hilario, M., Holthofer, H., Kalousis, A., Kaski, S., Knepper, M., Korneti, P., Kossida, S., Langham, R., Loftheim, H., Lopez-Novoa, J., Luider, T., Magni, F., Malats, N., Martin, J. L., Mayrhofer, C., Monsarrat, B., Mueller, G., Nielsen, S., Norling, M., O'Connell, S., Ortiz, A., Perunicic-Pekovic, G., Planelles, G., Polenakovic, M., Promponas, V., Rasic-Milutinovic, Z., Rehulka, P., Peter, K., Righetti, P. G., Ronco, P., Ryan, M., Sánchez-Carbayo, M., Schanstra, J., Semmes, J., Sheehan, D., Stenman, U. H., Stodkilde-Jorgensen, L., Tasic, V., Theodorescu, D., Thongboonkerd, V., Toncheva, D., Tsillibari, E., Tsiotis, G., Unwin, R., Vanholder, R., Vassilev, D., Vickers, M. E., Verhulst, A., Vilasi, A., Vlahakos, D., Vonk, R., Wright, P. C., Yamamoto, T., Yutaka, Y. & Zielenkiewicz, P., 2009, In: Proteomics - Clinical Applications. 3, 9, p. 1017-1022 5 p.

Research output: Contribution to journal › Letter › peer-review

An active registry for bioinformatics web services

Pettifer, S., Thorne, D., Mcdermott, P., Attwood, T., Baran, J., Bryne, J. C., Hupponen, T., Mowbray, D. & Vriend, G., Aug 2009, In: Bioinformatics. 25, 16, p. 2090-2091 1 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

74 Downloads (Pure)

EMBER - A European Multimedia Bioinformatics Educational Resource

Attwood, T. K., Selimas, I., Buis, R., Altenburg, R., Herzog, R., Ledent, V., Ghita, V., Fernandes, P., Marques, I., Brugman, M. & Maw, S. (Editor), 2009, Bioscience Education: Collected Papers. p. 167-178

Research output: Chapter in Book/Report/Conference proceeding › Chapter

InterPro: The integrative protein signature database

Hunter, S., Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Binns, D., Bork, P., Das, U., Daugherty, L., Duquenne, L., Finn, R. D., Gough, J., Haft, D., Hulo, N., Kahn, D., Kelly, E., Laugraud, A., Letunic, I., Lonsdale, D. & Lopez, R. & 18 others, Madera, M., Maslen, J., Mcanulla, C., McDowall, J., Mistry, J., Mitchell, A., Mulder, N., Natale, D., Orengo, C., Quinn, A. F., Selengut, J. D., Sigrist, C. J. A., Thimma, M., Thomas, P. D., Valentin, F., Wilson, D., Wu, C. H. & Yeats, C., 2009, In: Nucleic acids research.. 37, 1, p. D211-D215

Research output: Contribution to journal › Article › peer-review

Terri Attwood, BSc, PhD

Research output

Search results