BioExcel-2 Centre of Excellence for Computational Biomolecular Research

Goble, Carole (PI)
Soiland-Reyes, Stian (Researcher)
Long, Robin (Researcher)
Lowe, Douglas (Researcher)
Woolland, Oliver (Researcher)
Capes, Gerard (Researcher)

8 Article
3 Conference article
1 Other report
1 Comment/debate
More
- 1 Other contribution
- 1 Preprint

15 results

2023
Towards a common standard for data and specimen provenance in life sciences
Wittner, R., Holub, P., Mascia, C., Frexia, F., Müller, H., Plass, M., Allocca, C., Betsou, F., Burdett, T., Cancio, I., Chapman, A., Chapman, M., Courtot, M., Curcin, V., Eder, J., Elliot, M., Exter, K., Goble, C., Golebiewski, M., Kisler, B., & 16 othersKremer, A., Leo, S., Lin-Gibson, S., Marsano, A., Mattavelli, M., Moore, J., Nakae, H., Perseil, I., Salman, A., Sluka, J., Soiland-Reyes, S., Strambio-De-Castillia, C., Sussman, M., Swedlow, J. R., Zatloukal, K. & Geiger, J., 18 Apr 2023, (E-pub ahead of print) In: Learning Health Systems. e10365.
Research output: Contribution to journal › Comment/debate › peer-review

Open Access
File
122 Downloads (Pure)
2022
Creating lightweight FAIR Digital Objects with RO-Crate
Soiland-Reyes, S., Sefton, P., Castro, L. J., Coppens, F., Garijo, D., Leo, S., Portier, M. & Groth, P., 12 Oct 2022, In: Research Ideas and Outcomes. 8, e93937.
Research output: Contribution to journal › Conference article › peer-review

Open Access
Incrementally building FAIR Digital Objects with Specimen Data Refinery workflows
Woolland, O., Brack, P., Soiland-reyes, S., Scott, B. & Livermore, L., 12 Oct 2022, In: Research Ideas and Outcomes. 8, e94349.
Research output: Contribution to journal › Conference article › peer-review

Open Access
Making Canonical Workflow Building Blocks Interoperable across Workflow Languages
Soiland-Reyes, S., Bayarri, G., Andrio, P., Long, R., Lowe, D., Niewielska, A., Hospital, A. & Groth, P., 1 Apr 2022, In: Data Intelligence. 4, 2, p. 342-357 16 p.
Research output: Contribution to journal › Article › peer-review

Open Access
Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language
Crusoe, M. R., Abeln, S., Iosup, A., Amstutz, P., Chilton, J., Tijanić, N., Ménager, H., Soiland-Reyes, S., Gavrilović, B., Goble, C. A. & The CWL Community, 20 May 2022, In: Communications of the ACM. 65, 6, p. 54–63 10 p.
Research output: Contribution to journal › Article › peer-review

Open Access
File
59 Downloads (Pure)
Packaging research artefacts with RO-Crate
Soiland-Reyes, S., Sefton, P., Crosas, M., Castro, L. J., Coppens, F., Fernández, J. M., Garijo, D., Grüning, B., La Rosa, M., Leo, S., Ó Carragáin, E., Portier, M., Trisovic, A., RO-Crate Community, Groth, P. & Goble, C., 20 Jul 2022, In: Data Science. 5, 2, p. 97-138 42 p.
Research output: Contribution to journal › Article › peer-review

Open Access
Updating Linked Data practices for FAIR Digital Object principles
Soiland-reyes, S., Castro, L. J., Garijo, D., Portier, M., Goble, C. & Groth, P., 12 Oct 2022, In: Research Ideas and Outcomes. 8, e94501.
Research output: Contribution to journal › Conference article › peer-review

Open Access
2021
Implementing FAIR Digital Objects in the EOSC-Life Workflow Collaboratory
Goble, C., Soiland-Reyes, S., Bacall, F., Owen, S., Williams, A., Eguinoa, I., Droesbeke, B., Leo, S., Pireddu, L., Rodríguez-Navas, L., Fernández, J. M., Capella-Gutierrez, S., Ménager, H., Grüning, B., Serrano-Solano, B., Ewels, P. & Coppens, F., 1 Mar 2021, In: Zenodo.
Research output: Contribution to journal › Article

Open Access
Perspectives on automated composition of workflows in the life sciences: [version 1; peer review: 2 approved]
Lamprecht, A-L., Palmblad, M., Ison, J., Schwämmle, V., Manir, M. S. A., Altintas, I., Amor, A. B. H., Capella-Gutierrez, S., Charonyktakis, P., Crusoe, M. R., Gil, Y., Goble, C., Griffin, T. J., Groth, P., Ienasescu, H., Jagtap, P., Kalaš, M., Kasalica, V., Khanteymoori, A., Kuhn, T., & 10 othersMei, H., Ménager, H., Möller, S., Robert, V., Soiland-Reyes, S., Stevens, R., Szaniszlo, S., Verberne, S., Verhoeven, A. & Wolstencroft, K., 7 Sept 2021, In: F1000Research. 10, 897.
Research output: Contribution to journal › Article › peer-review

Open Access
Semantic micro-contributions with decentralized nanopublication services
Kuhn, T., Taelman, R., Emonet, V., Antonatos, H., Soiland-Reyes, S. & Dumontier, M., 8 Mar 2021, In: PeerJ. 7, p. 1-23 23 p., e387.
Research output: Contribution to journal › Article › peer-review

Open Access
Towards a Common Standard for Data and Specimen Provenance in Life Sciences
Holub, P., Wittner, R., Mascia, C., Frexia, F., Müller, H., Plass, M., Allocca, C., Betsou, F., Burdett, T., Cancio, I., Chapman, A., Chapman, M., Courtot, M., Curcin, V., Eder, J., Elliot, M., Exter, K., Fairweather, E., Goble, C., Golebiewski, M., & 16 othersKisler, B., Kremer, A., Lin-Gibson, S., Marsano, A., Mattavelli, M., Moore, J., Nakae, H., Perseil, I., Salman, A., Sluka, J., Soiland-Reyes, S., Strambio-De-Castillia, C., Sussman, M., Swedlow, J., Zatloukal, K. & Geiger, J., 2021, 12 p. (Zenodo).
Research output: Working paper › Preprint

File
41 Downloads (Pure)
2020
IEEE Standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to Facilitate Communication: IEEE Std 2791-2020
IEEE P2791 BioCompute Working Group (BCOWG), Mazumder, R. (ed.) & Simonyan, V. (ed.), 11 May 2020, IEEE. 16 p.
Research output: Book/Report › Other report › peer-review

Open Access
File
170 Downloads (Pure)
2019
BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows
Andrio, P., Hospital, A., Conejero, J., Jordá, L., Del Pino, M., Codo, L., Soiland-reyes, S., Goble, C., Lezzi, D., Badia, R. M., Orozco, M. & Gelpi, J. L., 10 Sept 2019, In: Scientific Data. 6, 1, 8 p., 169.
Research output: Contribution to journal › Article › peer-review

Open Access
FAIR Computational Workflows
Goble, C., Cohen-Boulakia, S., Soiland-Reyes, S., Garijo, D., Gil, Y., Crusoe, M. R., Peters, K. & Schober, D., 1 Nov 2019, In: Data Intelligence. 2, 1, p. 108–121 14 p.
Research output: Contribution to journal › Article › peer-review

Open Access
File
591 Downloads (Pure)
RO-Crate Metadata Specification 1.0
Sefton, P., Carragáin, E. Ó., Soiland-Reyes, S., Corcho, O., Garijo, D., Palma, R., Coppens, F., Goble, C., González, J. M. F., Chard, K., Gomez-Perez, J. M., Crusoe, M. R., Eguinoa, I., Juty, N., Holmes, K., Clark, J. A., Capella-Gutierrez, S., Gray, A. J. G., Owen, S., Williams, A. R., & 3 othersTartari, G., Bacall, F. & Thelen, T., 15 Nov 2019, Zenodo.
Research output: Other contribution

Open Access

BioExcel-2 Centre of Excellence for Computational Biomolecular Research

Research output

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