Abstract
High-grade serous ovarian carcinoma is characterised by TP53 mutation and extensive chromosome instability (CIN). Because our understanding of CIN mechanisms is based largely on analysing established cell lines, we developed a workflow for generating ex vivo cultures from patient biopsies to provide models that support interrogation of CIN mechanisms in cells not extensively cultured in vitro. Here, we describe a “living biobank” of ovarian cancer models with extensive replicative capcity, derived from both ascites and solid biopsies. Fifteen models are characterised by p53 profiling, exome sequencing and transcriptomics, and karyotyped using single-cell whole-genome sequencing. Time-lapse microscopy reveals catastrophic and highly heterogeneous mitoses, suggesting that analysis of established cell lines probably underestimates mitotic dysfunction in advanced human cancers. Drug profiling reveals cisplatin sensitivities consistent with patient responses, demonstrating that this workflow has potential to generate personalized avatars with advantages over current pre-clinical models and the potential to guide clinical decision making.
| Original language | English |
|---|---|
| Article number | 822 |
| Journal | Nature Communications |
| Volume | 11 |
| Issue number | 1 |
| DOIs | |
| Publication status | Published - 13 Feb 2020 |
UN SDGs
This output contributes to the following UN Sustainable Development Goals (SDGs)
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SDG 3 Good Health and Well-being
Keywords
- Biological Specimen Banks
- Chromosomal Instability
- Drug Resistance, Neoplasm
- Female
- Gene Expression
- Gene Expression Profiling
- Histological Techniques/methods
- Humans
- Imaging, Three-Dimensional
- In Situ Hybridization, Fluorescence
- In Vitro Techniques
- Karyotyping
- Mitosis/genetics
- Models, Biological
- Mutation
- Ovarian Neoplasms/drug therapy
- Paclitaxel/pharmacology
- Single-Cell Analysis
- Time-Lapse Imaging
- Tumor Suppressor Protein p53/genetics
- Whole Exome Sequencing
Research Highlights, Institutes and Platforms
- Manchester Cancer Research Centre
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Genomic Technologies
Hayes, A. (Expert Technical Specialist), Yang, S.-H. (Senior Technical Specialist), Morrisroe, C. (Technical Specialist), Holden, S. (Technical Specialist), Smiga, M. (Senior Technician), Anderson, B. (Senior Technician), Sharrocks, A. (Academic lead), Foster, F. (Other), Zeef, L. (Senior Technical Specialist), Donaldson, I. (Technical Specialist), Briggs, P. (Technical Specialist), Baker, S. M. (Other), Scholey, R. (Technical Specialist), Lin, I.-H. (Technical Specialist) & Zarrineh, P. (Technical Specialist)
FBMH Platform Sciences, Enabling Technologies & InfrastructureFacility/equipment: Facility
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