APE: Analyses of Phylogenetics and Evolution in R language

Emmanuel Paradis, J Claude, K Strimmer

    Research output: Contribution to journalArticlepeer-review

    Abstract

    Summary: Analysis of Phylogenetics and Evolution (APE) is a package written in the R language for use in molecular evolution and phylogenetics. APE provides both utility functions for reading and writing data and manipulating phylogenetic trees, as well as several advanced methods for phylogenetic and evolutionary analysis (e.g. comparative and population genetic methods). APE takes advantage of the many R functions for statistics and graphics, and also provides a flexible framework for developing and implementing further statistical methods for the analysis of evolutionary processes.
    Original languageEnglish
    Pages (from-to)289-290
    JournalBioinformatics
    Volume20
    Issue number2
    DOIs
    Publication statusPublished - 22 Jan 2004

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