TY - JOUR
T1 - Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets
AU - Kardynska, Malgorzata
AU - Smieja, Jaroslaw
AU - Paszek, Pawel
AU - Puszynski, Krzysztof
N1 - Funding Information:
This research was partially supported by the NCN grants DEC–2020/37/B/ST6/01959 (J.S.) and internal SUT grants 07/040/BK_22/1011 (M.K.) and 02/040/BK_22/1022 (K.P.).
Publisher Copyright:
© 2022 by the authors. Licensee MDPI, Basel, Switzerland.
PY - 2022/6/13
Y1 - 2022/6/13
N2 - Mathematical modeling of signaling pathways and regulatory networks has been supporting experimental research for some time now. Sensitivity analysis, aimed at finding model parameters whose changes yield significantly altered cellular responses, is an important part of modeling work. However, sensitivity methods are often directly transplanted from analysis of technical systems, and thus, they may not serve the purposes of analysis of biological systems. This paper presents a novel sensitivity analysis method that is particularly suited to the task of searching for potential molecular drug targets in signaling pathways. Using two sample models of pathways, p53/Mdm2 regulatory module and IFN-β-induced JAK/STAT signaling pathway, we show that the method leads to biologically relevant conclusions, identifying processes suitable for targeted pharmacological inhibition, represented by the reduction of kinetic parameter values. That, in turn, facilitates subsequent search for active drug components.
AB - Mathematical modeling of signaling pathways and regulatory networks has been supporting experimental research for some time now. Sensitivity analysis, aimed at finding model parameters whose changes yield significantly altered cellular responses, is an important part of modeling work. However, sensitivity methods are often directly transplanted from analysis of technical systems, and thus, they may not serve the purposes of analysis of biological systems. This paper presents a novel sensitivity analysis method that is particularly suited to the task of searching for potential molecular drug targets in signaling pathways. Using two sample models of pathways, p53/Mdm2 regulatory module and IFN-β-induced JAK/STAT signaling pathway, we show that the method leads to biologically relevant conclusions, identifying processes suitable for targeted pharmacological inhibition, represented by the reduction of kinetic parameter values. That, in turn, facilitates subsequent search for active drug components.
KW - bioinformatics
KW - chemotherapy
KW - molecular drug targets
KW - sensitivity analysis
KW - systems biology
UR - https://doi.org/10.3390/ijms23126604
U2 - 10.3390/ijms23126604
DO - 10.3390/ijms23126604
M3 - Article
C2 - 35743048
SN - 1661-6596
VL - 23
JO - International Journal of Molecular Sciences
JF - International Journal of Molecular Sciences
IS - 12
M1 - 6604
ER -