BioC interoperability track overview

Donald C. Comeau; Riza T heresa Batista-Navarro; Hong Jie Dai; Rezarta I slamaj Doğan; Antonio J imeno Yepes; Ritu Khare; Zhiyong Lu; Hernani Marques; Carolyn J. Mattingly; Mariana Neves; Yifan Peng; Rafal Rak; Fabio Rinaldi; Richard T zong Han Tsai; Karin Verspoor; Thomas C. Wiegers; Cathy H. Wu; W. John Wilbur

doi:10.1093/database/bau053

BioC interoperability track overview

Donald C. Comeau, Riza T heresa Batista-Navarro, Hong Jie Dai, Rezarta I slamaj Doğan, Antonio J imeno Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard T zong Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur

Natural Language Processing and Text Mining

University of Manchester (UOM)

Research output: Contribution to journal › Review article › peer-review

Abstract

BioC is a new simple XML format for sharing biomedical text and annotations and libraries to read and write that format. This promotes the development of interoperable tools for natural language processing (NLP) of biomedical text. The interoperability track at the BioCreative IV workshop featured contributions using or highlighting the BioC format. These contributions included additional implementations of BioC, many new corpora in the format, biomedical NLP tools consuming and producing the format and online services using the format. The ease of use, broad support and rapidly growing number of tools demonstrate the need for and value of the BioC format. Database URL: http://bioc.sourceforge.net/.

Original language	English
Journal	Database
Volume	2014
DOIs	https://doi.org/10.1093/database/bau053
Publication status	Published - 2014

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10.1093/database/bau053

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title = "BioC interoperability track overview",

abstract = "BioC is a new simple XML format for sharing biomedical text and annotations and libraries to read and write that format. This promotes the development of interoperable tools for natural language processing (NLP) of biomedical text. The interoperability track at the BioCreative IV workshop featured contributions using or highlighting the BioC format. These contributions included additional implementations of BioC, many new corpora in the format, biomedical NLP tools consuming and producing the format and online services using the format. The ease of use, broad support and rapidly growing number of tools demonstrate the need for and value of the BioC format. Database URL: http://bioc.sourceforge.net/.",

author = "Comeau, {Donald C.} and Batista-Navarro, {Riza T heresa} and Dai, {Hong Jie} and Doğan, {Rezarta I slamaj} and Yepes, {Antonio J imeno} and Ritu Khare and Zhiyong Lu and Hernani Marques and Mattingly, {Carolyn J.} and Mariana Neves and Yifan Peng and Rafal Rak and Fabio Rinaldi and Tsai, {Richard T zong Han} and Karin Verspoor and Wiegers, {Thomas C.} and Wu, {Cathy H.} and Wilbur, {W. John}",

year = "2014",

doi = "10.1093/database/bau053",

language = "English",

volume = "2014",

journal = "Database",

issn = "1758-0463",

publisher = "Oxford University Press",

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T1 - BioC interoperability track overview

AU - Comeau, Donald C.

AU - Batista-Navarro, Riza T heresa

AU - Dai, Hong Jie

AU - Doğan, Rezarta I slamaj

AU - Yepes, Antonio J imeno

AU - Khare, Ritu

AU - Lu, Zhiyong

AU - Marques, Hernani

AU - Mattingly, Carolyn J.

AU - Neves, Mariana

AU - Peng, Yifan

AU - Rak, Rafal

AU - Rinaldi, Fabio

AU - Tsai, Richard T zong Han

AU - Verspoor, Karin

AU - Wiegers, Thomas C.

AU - Wu, Cathy H.

AU - Wilbur, W. John

PY - 2014

Y1 - 2014

N2 - BioC is a new simple XML format for sharing biomedical text and annotations and libraries to read and write that format. This promotes the development of interoperable tools for natural language processing (NLP) of biomedical text. The interoperability track at the BioCreative IV workshop featured contributions using or highlighting the BioC format. These contributions included additional implementations of BioC, many new corpora in the format, biomedical NLP tools consuming and producing the format and online services using the format. The ease of use, broad support and rapidly growing number of tools demonstrate the need for and value of the BioC format. Database URL: http://bioc.sourceforge.net/.

AB - BioC is a new simple XML format for sharing biomedical text and annotations and libraries to read and write that format. This promotes the development of interoperable tools for natural language processing (NLP) of biomedical text. The interoperability track at the BioCreative IV workshop featured contributions using or highlighting the BioC format. These contributions included additional implementations of BioC, many new corpora in the format, biomedical NLP tools consuming and producing the format and online services using the format. The ease of use, broad support and rapidly growing number of tools demonstrate the need for and value of the BioC format. Database URL: http://bioc.sourceforge.net/.

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U2 - 10.1093/database/bau053

DO - 10.1093/database/bau053

M3 - Review article

C2 - 24980129

AN - SCOPUS:84925546253

SN - 1758-0463

VL - 2014

JO - Database

JF - Database

ER -

BioC interoperability track overview

Abstract

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