Capturing interoperable reproducible workflows with Common Workflow Language

Stian Soiland-Reyes; Farah Zaib Khan; Richard Sinnott; Andrew Lonie; Michael R. Crusoe; Carole Goble

doi:10.5281/zenodo.1312623

Capturing interoperable reproducible workflows with Common Workflow Language

Stian Soiland-Reyes, Farah Zaib Khan, Richard Sinnott, Andrew Lonie, Michael R. Crusoe, Carole Goble

Information Management

Research output: Contribution to conference › Abstract › peer-review

193 Downloads (Pure)

Abstract

We present our ongoing work on integrating Research Object practices with Common Workflow Language, capturing and describing prospective and retrospective provenance.

Original language	English
DOIs	https://doi.org/10.5281/zenodo.1312623
Publication status	Published - 29 Oct 2018
Event	Workshop on Research Objects: Workshop at IEEE eScience 2018 - IEEE eScience 2018, Amsterdam, Netherlands Duration: 29 Oct 2018 → 29 Oct 2018 http://www.researchobject.org/ro2018/

Workshop

Workshop	Workshop on Research Objects
Abbreviated title	RO2018
Country/Territory	Netherlands
City	Amsterdam
Period	29/10/18 → 29/10/18
Internet address	http://www.researchobject.org/ro2018/

Access to Document

10.5281/zenodo.1312623Licence: CC BY

cwlAccepted author manuscript, 98.5 KBLicence: CC BY
cwlOther version, 27.3 KBLicence: CC BY

http://s11.no/2018/cwl.htmlLicence: CC BY

3 Data set/Database
1 Commissioned report
1 Conference contribution
1 Abstract
More
- 1 Paper
- 1 Poster

A lightweight approach to research object data packaging
Ó Carragáin, E., Goble, C., Sefton, P. & Soiland-Reyes, S., 24 Jun 2019.
Research output: Contribution to conference › Abstract › peer-review

Open Access
File
256 Downloads (Pure)
CWLProv - Interoperable Retrospective Provenance capture and its challenges
Khan, F. Z., Soiland-Reyes, S., Crusoe, M. R., Lonie, A. & Sinnott, R., 27 Mar 2018, (Submitted). 14 p.
Research output: Contribution to conference › Paper › peer-review

File
31 Downloads (Pure)
CWL run of Alignment Workflow: CWLProv 0.6.0 Research Object
Khan, F. Z. & Soiland-Reyes, S. (Curator), 4 Dec 2018
Research output: Non-textual form › Data set/Database

Open Access

Cite this

@conference{7222dc6fdd8a4eeeb40759b88c3cc247,

title = "Capturing interoperable reproducible workflows with Common Workflow Language",

abstract = "We present our ongoing work on integrating Research Object practices with Common Workflow Language, capturing and describing prospective and retrospective provenance.",

author = "Stian Soiland-Reyes and Khan, {Farah Zaib} and Richard Sinnott and Andrew Lonie and Crusoe, {Michael R.} and Carole Goble",

note = "Abstract accepted for talk at RO2018; Workshop on Research Objects : Workshop at IEEE eScience 2018, RO2018 ; Conference date: 29-10-2018 Through 29-10-2018",

year = "2018",

month = oct,

day = "29",

doi = "10.5281/zenodo.1312623",

language = "English",

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T1 - Capturing interoperable reproducible workflows with Common Workflow Language

AU - Soiland-Reyes, Stian

AU - Khan, Farah Zaib

AU - Sinnott, Richard

AU - Lonie, Andrew

AU - Crusoe, Michael R.

AU - Goble, Carole

N1 - Abstract accepted for talk at RO2018

PY - 2018/10/29

Y1 - 2018/10/29

N2 - We present our ongoing work on integrating Research Object practices with Common Workflow Language, capturing and describing prospective and retrospective provenance.

AB - We present our ongoing work on integrating Research Object practices with Common Workflow Language, capturing and describing prospective and retrospective provenance.

U2 - 10.5281/zenodo.1312623

DO - 10.5281/zenodo.1312623

M3 - Abstract

T2 - Workshop on Research Objects

Y2 - 29 October 2018 through 29 October 2018

ER -

Capturing interoperable reproducible workflows with Common Workflow Language

Abstract

Workshop

Access to Document

Fingerprint

A lightweight approach to research object data packaging

CWLProv - Interoperable Retrospective Provenance capture and its challenges

CWL run of Alignment Workflow: CWLProv 0.6.0 Research Object

CWL run of Somatic Variant Calling Workflow (CWLProv 0.5.0 Research Object)

CWL run of RNA-seq Analysis Workflow (CWLProv 0.5.0 Research Object)

CWL run of Alignment Workflow (CWLProv 0.6.0 Research Object)

Cite this

Capturing interoperable reproducible workflows with Common Workflow Language

Abstract

Workshop

Access to Document

Fingerprint

Research output

A lightweight approach to research object data packaging

CWLProv - Interoperable Retrospective Provenance capture and its challenges

CWL run of Alignment Workflow: CWLProv 0.6.0 Research Object

Datasets

CWL run of Somatic Variant Calling Workflow (CWLProv 0.5.0 Research Object)

CWL run of RNA-seq Analysis Workflow (CWLProv 0.5.0 Research Object)

CWL run of Alignment Workflow (CWLProv 0.6.0 Research Object)

Cite this