TY - JOUR
T1 - Challenges in control of COVID-19: short doubling time and long delay to effect of interventions
AU - Pellis, Lorenzo
AU - Scarabel, Francesca
AU - Stage, Helena B.
AU - Overton, Christopher E.
AU - Chappell, Lauren H. K.
AU - Fearon, Elizabeth
AU - Bennett, Emma
AU - Lythgoe, Katrina A.
AU - House, Thomas A.
AU - Hall, Ian
N1 - Funding Information:
of the NHS, the NIHR, the Department of Health or Public Health England. L.P., T.A.H. and I.H. are also supported by The Alan Turing Institute for Data Science and Artificial Intelligence. L.P., T.A.H., I.H. and F.S. are also supported by the UKRI through the JUNIPER modelling consortium (grant no. MR/V038613/1). Acknowledgements. We acknowledge Alex Washburne and his collaborators, who were reaching similar conclusions from different directions, for valuable discussions. We also thank Ole Peters and an anonymous reviewer for the supportive comments and useful suggestions. Similar messages were raised in an extremely compelling way in the open letter from Italy to the scientific community [66], and we thank the numerous members of the general public, especially from hard-hit countries, who tried to voice these messages with whatever means they had.
Funding Information:
the Github repository https://github.com/thomasallanhouse/ covid19-growth, with the exception of the UK line-list data used to estimate the onset-to-hospitalisation delay, which are provided by Public Health England under a data-sharing agreement and not publicly available. Authors’ contributions. E.B., L.H.K.C., I.H., L.P., F.S. and H.B.S. collated epidemiological data. I.H., T.A.H., C.E.O. and L.P. carried out the formal data analysis. T.A.H., K.A.L., L.P., F.S. and H.B.S. were involved in the conceptualization and development of ideas. All authors contributed to writing the manuscript. Competing interests. Authors declare no competing interests. Funding. L.P., H.B.S. and C.E.O. are funded by the Wellcome Trust and the Royal Society (grant no. 202562/Z/16/Z). K.A.L. is funded by the Wellcome Trust and Royal Society (grant no. 107652/Z/15/Z). F.S. is funded by the CIHR 2019 Novel Coronavirus (COVID-19) rapid research program. L.H.K.C. is funded by the BBSRC (grant no. BB/ R009236/1). E.F. is funded by the MRC (grant no. MR/S020462/1). T.A.H. is supported by the Royal Society (grant no. INF\R2\180067). I.H. is supported by the National Institute for Health Research Health Protection Research Unit (NIHR HPRU) in Emergency Preparedness and Response and the National Institute for Health Research Policy Research Programme in Operational Research (OPERA). The views expressed are those of the author(s) and not necessarily those
Publisher Copyright:
© 2021 The Authors.
PY - 2021/7/19
Y1 - 2021/7/19
N2 - Early assessments of the growth rate of COVID-19 were subject to significant uncertainty, as expected with limited data and difficulties in case ascertainment, but as cases were recorded in multiple countries, more robust inferences could be made. Using multiple countries, data streams and methods, we estimated that, when unconstrained, European COVID-19 confirmed cases doubled on average every 3 days (range 2.2-4.3 days) and Italian hospital and intensive care unit admissions every 2-3 days; values that are significantly lower than the 5-7 days dominating the early published literature. Furthermore, we showed that the impact of physical distancing interventions was typically not seen until at least 9 days after implementation, during which time confirmed cases could grow eightfold. We argue that such temporal patterns are more critical than precise estimates of the time-insensitive basic reproduction number R 0 for initiating interventions, and that the combination of fast growth and long detection delays explains the struggle in countries' outbreak response better than large values of R 0 alone. One year on from first reporting these results, reproduction numbers continue to dominate the media and public discourse, but robust estimates of unconstrained growth remain essential for planning worst-case scenarios, and detection delays are still key in informing the relaxation and re-implementation of interventions. This article is part of the theme issue 'Modelling that shaped the early COVID-19 pandemic response in the UK'.
AB - Early assessments of the growth rate of COVID-19 were subject to significant uncertainty, as expected with limited data and difficulties in case ascertainment, but as cases were recorded in multiple countries, more robust inferences could be made. Using multiple countries, data streams and methods, we estimated that, when unconstrained, European COVID-19 confirmed cases doubled on average every 3 days (range 2.2-4.3 days) and Italian hospital and intensive care unit admissions every 2-3 days; values that are significantly lower than the 5-7 days dominating the early published literature. Furthermore, we showed that the impact of physical distancing interventions was typically not seen until at least 9 days after implementation, during which time confirmed cases could grow eightfold. We argue that such temporal patterns are more critical than precise estimates of the time-insensitive basic reproduction number R 0 for initiating interventions, and that the combination of fast growth and long detection delays explains the struggle in countries' outbreak response better than large values of R 0 alone. One year on from first reporting these results, reproduction numbers continue to dominate the media and public discourse, but robust estimates of unconstrained growth remain essential for planning worst-case scenarios, and detection delays are still key in informing the relaxation and re-implementation of interventions. This article is part of the theme issue 'Modelling that shaped the early COVID-19 pandemic response in the UK'.
KW - early growth rate
KW - incubation period
KW - non-pharmaceutical interventions
KW - onset-to-hospitalization delay
KW - reproduction number
KW - unconstrained epidemic
U2 - 10.1098/rstb.2020.0264
DO - 10.1098/rstb.2020.0264
M3 - Article
C2 - 34053267
SN - 0962-8436
VL - 376
JO - Philosophical Transactions of the Royal Society B: Biological Sciences
JF - Philosophical Transactions of the Royal Society B: Biological Sciences
IS - 1829
M1 - 20200264
ER -