Data access and integration in the ISPIDER proteomics Grid

Lucas Zamboulis; Hao Fan; Khalid Belhajjame; Jennifer Siepen; Andrew Jones; Nigel Martin; Alexandra Poulovassilis; Simon Hubbard; Suzanne M. Embury; Norman W. Paton

doi:10.1007/11799511_3

Data access and integration in the ISPIDER proteomics Grid

Lucas Zamboulis, Hao Fan, Khalid Belhajjame, Jennifer Siepen, Andrew Jones, Nigel Martin, Alexandra Poulovassilis, Simon Hubbard, Suzanne M. Embury, Norman W. Paton

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

Grid computing has great potential for supporting the integration of complex, fast changing biological data repositories to enable distributed data analysis. One scenario where Grid computing has such potential is provided by proteomics resources which are rapidly being developed with the emergence of affordable, reliable methods to study the proteome. The protein identifications arising from these methods derive from multiple repositories which need to be integrated to enable uniform access to them. A number of technologies exist which enable these resources to be accessed in a Grid environment, but the independent development of these resources means that significant data integration challenges, such as heterogeneity and schema evolution, have to be met. This paper presents an architecture which supports the combined use of Grid data access (OGSA-DAI), Grid distributed querying (OGSA-DQP) and data integration (AutoMed) software tools to support distributed data analysis. We discuss the application of this architecture for the integration of several autonomous proteomics data resources. © Springer-Verlag Berlin Heidelberg 2006.

Original language	English
Title of host publication	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)\|Lect. Notes Comput. Sci.
Publisher	Springer Nature
Pages	3-18
Number of pages	15
Volume	4075
ISBN (Print)	3540365931, 9783540365938
DOIs	https://doi.org/10.1007/11799511_3
Publication status	Published - 2006
Event	3rd International Workshop on Data Integration in the Life Sciences, DILS 2006 - Hinxton Duration: 1 Jul 2006 → … http://dblp.uni-trier.de/db/conf/dils/dils2006.html#ZamboulisFBSJMPHEP06http://dblp.uni-trier.de/rec/bibtex/conf/dils/ZamboulisFBSJMPHEP06.xmlhttp://dblp.uni-trier.de/rec/bibtex/conf/dils/ZamboulisFBSJMPHEP06

Publication series

Name	Lecture Notes in Computer Science

Conference

Conference	3rd International Workshop on Data Integration in the Life Sciences, DILS 2006
City	Hinxton
Period	1/07/06 → …
Internet address	http://dblp.uni-trier.de/db/conf/dils/dils2006.html#ZamboulisFBSJMPHEP06http://dblp.uni-trier.de/rec/bibtex/conf/dils/ZamboulisFBSJMPHEP06.xmlhttp://dblp.uni-trier.de/rec/bibtex/conf/dils/ZamboulisFBSJMPHEP06

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10.1007/11799511_3

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Zamboulis, L., Fan, H., Belhajjame, K., Siepen, J., Jones, A., Martin, N., Poulovassilis, A., Hubbard, S., Embury, S. M., & Paton, N. W. (2006). Data access and integration in the ISPIDER proteomics Grid. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci. (Vol. 4075, pp. 3-18). (Lecture Notes in Computer Science). Springer Nature. https://doi.org/10.1007/11799511_3

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Zamboulis, L, Fan, H, Belhajjame, K, Siepen, J, Jones, A, Martin, N, Poulovassilis, A, Hubbard, S , Embury, SM & Paton, NW 2006, Data access and integration in the ISPIDER proteomics Grid. in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. vol. 4075, Lecture Notes in Computer Science, Springer Nature, pp. 3-18, 3rd International Workshop on Data Integration in the Life Sciences, DILS 2006, Hinxton, 1/07/06. https://doi.org/10.1007/11799511_3

Data access and integration in the ISPIDER proteomics Grid. / Zamboulis, Lucas; Fan, Hao; Belhajjame, Khalid et al.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. Vol. 4075 Springer Nature, 2006. p. 3-18 (Lecture Notes in Computer Science).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

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AU - Poulovassilis, Alexandra

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Zamboulis L, Fan H, Belhajjame K, Siepen J, Jones A, Martin N et al. Data access and integration in the ISPIDER proteomics Grid. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. Vol. 4075. Springer Nature. 2006. p. 3-18. (Lecture Notes in Computer Science). doi: 10.1007/11799511_3

Data access and integration in the ISPIDER proteomics Grid

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