Enhancing RDM in Galaxy by integrating RO-Crate

Paul De Geest; Frederik Coppens; Stian Soiland-reyes; Ignacio Eguinoa; Simone Leo

doi:10.3897/rio.8.e95164

Enhancing RDM in Galaxy by integrating RO-Crate

Paul De Geest, Frederik Coppens, Stian Soiland-reyes, Ignacio Eguinoa, Simone Leo

Information Management

Research output: Contribution to journal › Conference article › peer-review

Abstract

We introduce how the Galaxy research environment integrates with RO-Crate as an implementation of Findable Accessible Interoperable Reproducible Digital Objects (FAIR Digital Objects / FDO) and how using RO-Crate as an exchange mechanism of workflows and their execution history helps integrate Galaxy with the wider ecosystem of ELIXIR and the European Open Science Cloud (EOSC-Life) to enable FAIR and reproducible data analysis.

Original language	English
Article number	e95164
Journal	Research Ideas and Outcomes
Volume	8
DOIs	https://doi.org/10.3897/rio.8.e95164
Publication status	Published - 12 Oct 2022
Event	First International Conference on FAIR Digital Objects: Turning the Internet into a meaningful data space - Naturalis Biodiversity Center, Leiden, Netherlands Duration: 26 Oct 2022 → 28 Oct 2022 Conference number: 1 https://www.fdo2022.org/

Keywords

FAIR digital object
workflow
exchange format
packaging format
metadata description
FAIR
reproducible data analysis

Access to Document

10.3897/rio.8.e95164Licence: CC BY

Cite this

@article{b0945414b670427280ac849f52e286df,

title = "Enhancing RDM in Galaxy by integrating RO-Crate",

abstract = "We introduce how the Galaxy research environment integrates with RO-Crate as an implementation of Findable Accessible Interoperable Reproducible Digital Objects (FAIR Digital Objects / FDO) and how using RO-Crate as an exchange mechanism of workflows and their execution history helps integrate Galaxy with the wider ecosystem of ELIXIR and the European Open Science Cloud (EOSC-Life) to enable FAIR and reproducible data analysis.",

keywords = "FAIR digital object, workflow, exchange format, packaging format, metadata description, FAIR, reproducible data analysis",

author = "{De Geest}, Paul and Frederik Coppens and Stian Soiland-reyes and Ignacio Eguinoa and Simone Leo",

year = "2022",

month = oct,

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doi = "10.3897/rio.8.e95164",

language = "English",

volume = "8",

journal = "Research Ideas and Outcomes",

issn = "2367-7163",

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note = "First International Conference on FAIR Digital Objects : Turning the Internet into a meaningful data space, FDO2022 ; Conference date: 26-10-2022 Through 28-10-2022",

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TY - JOUR

T1 - Enhancing RDM in Galaxy by integrating RO-Crate

AU - De Geest, Paul

AU - Coppens, Frederik

AU - Soiland-reyes, Stian

AU - Eguinoa, Ignacio

AU - Leo, Simone

N1 - Conference code: 1

PY - 2022/10/12

Y1 - 2022/10/12

N2 - We introduce how the Galaxy research environment integrates with RO-Crate as an implementation of Findable Accessible Interoperable Reproducible Digital Objects (FAIR Digital Objects / FDO) and how using RO-Crate as an exchange mechanism of workflows and their execution history helps integrate Galaxy with the wider ecosystem of ELIXIR and the European Open Science Cloud (EOSC-Life) to enable FAIR and reproducible data analysis.

AB - We introduce how the Galaxy research environment integrates with RO-Crate as an implementation of Findable Accessible Interoperable Reproducible Digital Objects (FAIR Digital Objects / FDO) and how using RO-Crate as an exchange mechanism of workflows and their execution history helps integrate Galaxy with the wider ecosystem of ELIXIR and the European Open Science Cloud (EOSC-Life) to enable FAIR and reproducible data analysis.

KW - FAIR digital object

KW - workflow

KW - exchange format

KW - packaging format

KW - metadata description

KW - FAIR

KW - reproducible data analysis

UR - https://doi.org/10.5281/zenodo.7257146

U2 - 10.3897/rio.8.e95164

DO - 10.3897/rio.8.e95164

M3 - Conference article

VL - 8

JO - Research Ideas and Outcomes

JF - Research Ideas and Outcomes

SN - 2367-7163

M1 - e95164

T2 - First International Conference on FAIR Digital Objects

Y2 - 26 October 2022 through 28 October 2022

ER -

Enhancing RDM in Galaxy by integrating RO-Crate

Abstract

Keywords

Access to Document

Other files and links

Fingerprint

EOSC-Life: Providing an open collaborative space for digital biology in Europe

Packaging research artefacts with RO-Crate

Implementing FAIR Digital Objects in the EOSC-Life Workflow Collaboratory

CWLProv - Interoperable Retrospective Provenance capture and its challenges

Cite this

Enhancing RDM in Galaxy by integrating RO-Crate

Abstract

Keywords

Access to Document

Other files and links

Fingerprint

Projects

EOSC-Life: Providing an open collaborative space for digital biology in Europe

Research output

Packaging research artefacts with RO-Crate

Implementing FAIR Digital Objects in the EOSC-Life Workflow Collaboratory

CWLProv - Interoperable Retrospective Provenance capture and its challenges

Cite this