EOSC-Life Workflow Collaboratory for the Life Sciences

Carole Goble; Finn Bacall; Stian Soiland-Reyes; Stuart Owen; Ignacio Eguinoa; Bert Droesbeke; Hervé Ménager; Laura Rodriguez-Navas; José m. Fernández; Björn Grüning; Simone Leo; Luca Pireddu; Michael Crusoe; Johan Gustafsson; Salvador Capella-Gutierrez; Frederik Coppens

doi:10.52825/cordi.v1i.352

EOSC-Life Workflow Collaboratory for the Life Sciences

Carole Goble
, Finn Bacall
, Stian Soiland-Reyes
, Stuart Owen
, Ignacio Eguinoa
, Bert Droesbeke
, Hervé Ménager
, Laura Rodriguez-Navas
, José m. Fernández
, Björn Grüning
, Simone Leo
, Luca Pireddu
, Michael Crusoe
, Johan Gustafsson
, Salvador Capella-Gutierrez
, Frederik Coppens

Information Management

Research output: Chapter in Book/Conference proceeding › Conference contribution › peer-review

Abstract

Workflows have become a major tool for the processing of Research Data, for example, data collection and data cleaning pipelines, data analytics, and data update feeds populating public archives. The EOSC-Life Research Infrastructure Cluster project brought together Europe’s Life Science Research Infrastructures to create an Open, Digital and Collaborative space for biological and medical research to develop a cloud-based Workflow Collaboratory. As adopting FAIR practices extends beyond data, the Workflow Collaboratory drives the implementation of FAIR computational workflows and tools. It fosters tool-focused collaborations and reuse via the sharing of data analysis workflows and offers an ecosystem of services for researchers and workflow specialists to find, use and reuse workflows. It’s web-friendly Digital Object Metadata Framework, based on RO-Crate and Bioschemas, supports the description and exchange of workflows across the services.

Original language	English
Title of host publication	Proceedings of the Conference on Research Data Infrastructure
Subtitle of host publication	1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities
Publisher	TIB Open Publishing
Volume	1
DOIs	https://doi.org/10.52825/cordi.v1i.352
Publication status	Published - 7 Sept 2023
Event	1st Conference on Research Data Infrastructure (CoRDI) : Connecting Communities - Karlsruhe, Germany Duration: 12 Sept 2023 → 14 Sept 2023 Conference number: 1 https://www.nfdi.de/cordi-2023/?lang=en

Publication series

Name	Proceedings of the Conference on Research Data Infrastructure
ISSN (Print)	2941-296X

Conference

Conference	1st Conference on Research Data Infrastructure (CoRDI)
Abbreviated title	CoRDI
Country/Territory	Germany
City	Karlsruhe
Period	12/09/23 → 14/09/23
Internet address	https://www.nfdi.de/cordi-2023/?lang=en

Access to Document

10.52825/cordi.v1i.352Licence: CC BY

1 Active
2 Finished

eScience Lab
Goble, C. (PI), Soiland-Reyes, S. (PI), Andrabi, M. (Researcher), Stewart, A. (Affiliate), Bacall, F. (Researcher), Chadwick, E. (Researcher), Lowe, D. (Technical team), Nenadic, A. (Affiliate), Owen, S. (Researcher), Reed, P. (Researcher), Hambley, A. (Researcher), Sufi, S. A. (Supervisor), Woolland, O. (Technical team), Del-Pinto, W. (Researcher), Sparks, M. (Affiliate), Seip, O. (Affiliate), Slavin, P. (Researcher), Feizollah, A. (Researcher), Rajasekar, A. (PGR student), Suthar, S. A. R. (PGR student), Banerji, A. (Affiliate), Gray, A. (Affiliate), Jay, C. (Affiliate), Herrerias Azcue, F. (Researcher), Xu, F. (Affiliate), Juty, N. (Researcher), Hughes-Noehrer, L. (Affiliate), Yehudi, Y. (PGR student), Missier, P. (Researcher), Stevens, R. (Affiliate) & Aloqalaa, M. (PGR student)
1/01/15 → …
Project: Research
EOSC-Life: Providing an open collaborative space for digital biology in Europe
Goble, C. (PI), Bacall, F. (Technical team), Owen, S. (Researcher), Soiland-Reyes, S. (Researcher) & Williams, A. (Researcher)
1/03/19 → 31/08/23
Project: Research
BioExcel-2 Centre of Excellence for Computational Biomolecular Research
Goble, C. (PI), Soiland-Reyes, S. (Researcher), Long, R. (Researcher), Lowe, D. (Researcher), Woolland, O. (Researcher) & Capes, G. (Researcher)
1/01/19 → 30/06/22
Project: Research

1 Article

WorkflowHub: a registry for computational workflows
Gustafsson, O. J. R., Wilkinson, S. R., Bacall, F., Soiland-Reyes, S., Leo, S., Pireddu, L., Owen, S., Juty, N., Fernández, J. M., Brown, T., Ménager, H., Grüning, B., Capella-Gutierrez, S., Coppens, F. & Goble, C., 21 May 2025, In: Scientific Data. 12, 837.
Research output: Contribution to journal › Article › peer-review

Open Access
File
177 Downloads (Pure)

Cite this

Goble, C., Bacall, F., Soiland-Reyes, S., Owen, S., Eguinoa, I., Droesbeke, B., Ménager, H., Rodriguez-Navas, L., Fernández, J. M., Grüning, B., Leo, S., Pireddu, L., Crusoe, M., Gustafsson, J., Capella-Gutierrez, S., & Coppens, F. (2023). EOSC-Life Workflow Collaboratory for the Life Sciences. In Proceedings of the Conference on Research Data Infrastructure: 1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities (Vol. 1). (Proceedings of the Conference on Research Data Infrastructure). TIB Open Publishing. https://doi.org/10.52825/cordi.v1i.352

@inproceedings{f1c7f9e3e6c9460e9516f89cd61f9ecd,

title = "EOSC-Life Workflow Collaboratory for the Life Sciences",

abstract = "Workflows have become a major tool for the processing of Research Data, for example, data collection and data cleaning pipelines, data analytics, and data update feeds populating public archives. The EOSC-Life Research Infrastructure Cluster project brought together Europe{\textquoteright}s Life Science Research Infrastructures to create an Open, Digital and Collaborative space for biological and medical research to develop a cloud-based Workflow Collaboratory. As adopting FAIR practices extends beyond data, the Workflow Collaboratory drives the implementation of FAIR computational workflows and tools. It fosters tool-focused collaborations and reuse via the sharing of data analysis workflows and offers an ecosystem of services for researchers and workflow specialists to find, use and reuse workflows. It{\textquoteright}s web-friendly Digital Object Metadata Framework, based on RO-Crate and Bioschemas, supports the description and exchange of workflows across the services. ",

author = "Carole Goble and Finn Bacall and Stian Soiland-Reyes and Stuart Owen and Ignacio Eguinoa and Bert Droesbeke and Herv{\'e} M{\'e}nager and Laura Rodriguez-Navas and Fern{\'a}ndez, \{Jos{\'e} m.\} and Bj{\"o}rn Gr{\"u}ning and Simone Leo and Luca Pireddu and Michael Crusoe and Johan Gustafsson and Salvador Capella-Gutierrez and Frederik Coppens",

year = "2023",

month = sep,

day = "7",

doi = "10.52825/cordi.v1i.352",

language = "English",

volume = "1",

series = "Proceedings of the Conference on Research Data Infrastructure",

publisher = "TIB Open Publishing",

booktitle = "Proceedings of the Conference on Research Data Infrastructure",

address = "Germany",

note = "1st Conference on Research Data Infrastructure (CoRDI) : Connecting Communities, CoRDI ; Conference date: 12-09-2023 Through 14-09-2023",

url = "https://www.nfdi.de/cordi-2023/?lang=en",

}

Goble, C , Bacall, F , Soiland-Reyes, S , Owen, S, Eguinoa, I, Droesbeke, B, Ménager, H, Rodriguez-Navas, L, Fernández, JM, Grüning, B, Leo, S, Pireddu, L, Crusoe, M, Gustafsson, J, Capella-Gutierrez, S & Coppens, F 2023, EOSC-Life Workflow Collaboratory for the Life Sciences. in Proceedings of the Conference on Research Data Infrastructure: 1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities . vol. 1, Proceedings of the Conference on Research Data Infrastructure, TIB Open Publishing, 1st Conference on Research Data Infrastructure (CoRDI) , Karlsruhe, Germany, 12/09/23. https://doi.org/10.52825/cordi.v1i.352

EOSC-Life Workflow Collaboratory for the Life Sciences. / Goble, Carole ; Bacall, Finn ; Soiland-Reyes, Stian et al.
Proceedings of the Conference on Research Data Infrastructure: 1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities . Vol. 1 TIB Open Publishing, 2023. (Proceedings of the Conference on Research Data Infrastructure).

Research output: Chapter in Book/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - EOSC-Life Workflow Collaboratory for the Life Sciences

AU - Goble, Carole

AU - Bacall, Finn

AU - Soiland-Reyes, Stian

AU - Owen, Stuart

AU - Eguinoa, Ignacio

AU - Droesbeke, Bert

AU - Ménager, Hervé

AU - Rodriguez-Navas, Laura

AU - Fernández, José m.

AU - Grüning, Björn

AU - Leo, Simone

AU - Pireddu, Luca

AU - Crusoe, Michael

AU - Gustafsson, Johan

AU - Capella-Gutierrez, Salvador

AU - Coppens, Frederik

N1 - Conference code: 1

PY - 2023/9/7

Y1 - 2023/9/7

N2 - Workflows have become a major tool for the processing of Research Data, for example, data collection and data cleaning pipelines, data analytics, and data update feeds populating public archives. The EOSC-Life Research Infrastructure Cluster project brought together Europe’s Life Science Research Infrastructures to create an Open, Digital and Collaborative space for biological and medical research to develop a cloud-based Workflow Collaboratory. As adopting FAIR practices extends beyond data, the Workflow Collaboratory drives the implementation of FAIR computational workflows and tools. It fosters tool-focused collaborations and reuse via the sharing of data analysis workflows and offers an ecosystem of services for researchers and workflow specialists to find, use and reuse workflows. It’s web-friendly Digital Object Metadata Framework, based on RO-Crate and Bioschemas, supports the description and exchange of workflows across the services.

AB - Workflows have become a major tool for the processing of Research Data, for example, data collection and data cleaning pipelines, data analytics, and data update feeds populating public archives. The EOSC-Life Research Infrastructure Cluster project brought together Europe’s Life Science Research Infrastructures to create an Open, Digital and Collaborative space for biological and medical research to develop a cloud-based Workflow Collaboratory. As adopting FAIR practices extends beyond data, the Workflow Collaboratory drives the implementation of FAIR computational workflows and tools. It fosters tool-focused collaborations and reuse via the sharing of data analysis workflows and offers an ecosystem of services for researchers and workflow specialists to find, use and reuse workflows. It’s web-friendly Digital Object Metadata Framework, based on RO-Crate and Bioschemas, supports the description and exchange of workflows across the services.

U2 - 10.52825/cordi.v1i.352

DO - 10.52825/cordi.v1i.352

M3 - Conference contribution

VL - 1

T3 - Proceedings of the Conference on Research Data Infrastructure

BT - Proceedings of the Conference on Research Data Infrastructure

PB - TIB Open Publishing

T2 - 1st Conference on Research Data Infrastructure (CoRDI)

Y2 - 12 September 2023 through 14 September 2023

ER -

Goble C , Bacall F , Soiland-Reyes S , Owen S, Eguinoa I, Droesbeke B et al. EOSC-Life Workflow Collaboratory for the Life Sciences. In Proceedings of the Conference on Research Data Infrastructure: 1st Conference on Research Data Infrastructure (CoRDI) - Connecting Communities . Vol. 1. TIB Open Publishing. 2023. (Proceedings of the Conference on Research Data Infrastructure). doi: 10.52825/cordi.v1i.352

EOSC-Life Workflow Collaboratory for the Life Sciences

Abstract

Publication series

Conference

Access to Document

Fingerprint

Projects

eScience Lab

EOSC-Life: Providing an open collaborative space for digital biology in Europe

BioExcel-2 Centre of Excellence for Computational Biomolecular Research

Research output

WorkflowHub: a registry for computational workflows

Cite this