FAIRDOMHub: a repository and collaboration environment for sharing systems biology research

Katherine Wolstencroft; Olga Krebs; Jacob Snoep; Natalie J Stanford; Finn Bacall; Martin Golebiewski; Rostyk Kuzyakiv; Quyen Nguyen; Stuart Owen; Stian Soiland-Reyes; Jakub Straszewski; David D van Niekerk; Alan Williams; Lars Malmström; Bernd Rinn; Wolfgang Müller; Carole Goble

doi:10.1093/nar/gkw1032

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research

Katherine Wolstencroft, Olga Krebs, Jacob Snoep, Natalie J Stanford, Finn Bacall, Martin Golebiewski, Rostyk Kuzyakiv, Quyen Nguyen, Stuart Owen, Stian Soiland-Reyes, Jakub Straszewski, David D van Niekerk, Alan Williams, Lars Malmström, Bernd Rinn, Wolfgang Müller, Carole Goble

Information Management

Research output: Contribution to journal › Article › peer-review

Abstract

The FAIRDOMHub is a repository for publishing FAIR (Findable, Accessible, Interoperable and Reusable) Data, Operating procedures and Models (https://fairdomhub.org/) for the Systems Biology community. It is a web-accessible repository for storing and sharing systems biology research assets. It enables researchers to organize, share and publish data, models and protocols, interlink them in the context of the systems biology investigations that produced them, and to interrogate them via API interfaces. By using the FAIRDOMHub, researchers can achieve more effective exchange with geographically distributed collaborators during projects, ensure results are sustained and preserved and generate reproducible publications that adhere to the FAIR guiding principles of data stewardship.

Original language	English
Pages (from-to)	D404-D407
Number of pages	4
Journal	Nucleic acids research
Volume	45
Issue number	D1
Early online date	28 Nov 2016
DOIs	https://doi.org/10.1093/nar/gkw1032
Publication status	Published - 2016

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Institute for Data Science and AI

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10.1093/nar/gkw1032Licence: CC BY

http://nar.oxfordjournals.org/content/early/2016/11/28/nar.gkw1032.full

1 Abstract

FAIR Bioinformatics computation and data management: FAIRDOM and the Norwegian Digital Life initiative
Stanford, N., Bacall, F., Zamanzad Ghavidel, F., Golebiewski, M., Jonassen, I., Kleppe, R., Krebs, O., Leonov, H., Owen, S., Peterson, K., Rey, M., Soiland-Reyes, S., Tekle, K., Weiderman, A., Williams, A., Wittig, U., Wolstencroft, K., Goksøyr, A., Snoep, J. & Vik, J. O. & 2 others, Müller, W. & Goble, C., 4 Sept 2018, (Accepted/In press). 4 p.
Research output: Contribution to conference › Abstract › peer-review

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THOR Ambassador Newsletter 2017-06
Duine, M. & Soiland-Reyes, S.
13/06/17
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Wolstencroft, K., Krebs, O., Snoep, J., Stanford, N. J., Bacall, F., Golebiewski, M., Kuzyakiv, R., Nguyen, Q., Owen, S., Soiland-Reyes, S., Straszewski, J., van Niekerk, D. D., Williams, A., Malmström, L., Rinn, B., Müller, W., & Goble, C. (2016). FAIRDOMHub: a repository and collaboration environment for sharing systems biology research. Nucleic acids research, 45(D1), D404-D407. https://doi.org/10.1093/nar/gkw1032

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title = "FAIRDOMHub: a repository and collaboration environment for sharing systems biology research",

abstract = "The FAIRDOMHub is a repository for publishing FAIR (Findable, Accessible, Interoperable and Reusable) Data, Operating procedures and Models (https://fairdomhub.org/) for the Systems Biology community. It is a web-accessible repository for storing and sharing systems biology research assets. It enables researchers to organize, share and publish data, models and protocols, interlink them in the context of the systems biology investigations that produced them, and to interrogate them via API interfaces. By using the FAIRDOMHub, researchers can achieve more effective exchange with geographically distributed collaborators during projects, ensure results are sustained and preserved and generate reproducible publications that adhere to the FAIR guiding principles of data stewardship.",

author = "Katherine Wolstencroft and Olga Krebs and Jacob Snoep and Stanford, {Natalie J} and Finn Bacall and Martin Golebiewski and Rostyk Kuzyakiv and Quyen Nguyen and Stuart Owen and Stian Soiland-Reyes and Jakub Straszewski and {van Niekerk}, {David D} and Alan Williams and Lars Malmstr{\"o}m and Bernd Rinn and Wolfgang M{\"u}ller and Carole Goble",

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doi = "10.1093/nar/gkw1032",

language = "English",

volume = "45",

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Wolstencroft, K, Krebs, O, Snoep, J, Stanford, NJ, Bacall, F, Golebiewski, M, Kuzyakiv, R, Nguyen, Q, Owen, S , Soiland-Reyes, S, Straszewski, J, van Niekerk, DD, Williams, A, Malmström, L, Rinn, B, Müller, W & Goble, C 2016, 'FAIRDOMHub: a repository and collaboration environment for sharing systems biology research', Nucleic acids research, vol. 45, no. D1, pp. D404-D407. https://doi.org/10.1093/nar/gkw1032

TY - JOUR

T1 - FAIRDOMHub

T2 - a repository and collaboration environment for sharing systems biology research

AU - Wolstencroft, Katherine

AU - Krebs, Olga

AU - Snoep, Jacob

AU - Stanford, Natalie J

AU - Bacall, Finn

AU - Golebiewski, Martin

AU - Kuzyakiv, Rostyk

AU - Nguyen, Quyen

AU - Owen, Stuart

AU - Soiland-Reyes, Stian

AU - Straszewski, Jakub

AU - van Niekerk, David D

AU - Williams, Alan

AU - Malmström, Lars

AU - Rinn, Bernd

AU - Müller, Wolfgang

AU - Goble, Carole

PY - 2016

Y1 - 2016

N2 - The FAIRDOMHub is a repository for publishing FAIR (Findable, Accessible, Interoperable and Reusable) Data, Operating procedures and Models (https://fairdomhub.org/) for the Systems Biology community. It is a web-accessible repository for storing and sharing systems biology research assets. It enables researchers to organize, share and publish data, models and protocols, interlink them in the context of the systems biology investigations that produced them, and to interrogate them via API interfaces. By using the FAIRDOMHub, researchers can achieve more effective exchange with geographically distributed collaborators during projects, ensure results are sustained and preserved and generate reproducible publications that adhere to the FAIR guiding principles of data stewardship.

AB - The FAIRDOMHub is a repository for publishing FAIR (Findable, Accessible, Interoperable and Reusable) Data, Operating procedures and Models (https://fairdomhub.org/) for the Systems Biology community. It is a web-accessible repository for storing and sharing systems biology research assets. It enables researchers to organize, share and publish data, models and protocols, interlink them in the context of the systems biology investigations that produced them, and to interrogate them via API interfaces. By using the FAIRDOMHub, researchers can achieve more effective exchange with geographically distributed collaborators during projects, ensure results are sustained and preserved and generate reproducible publications that adhere to the FAIR guiding principles of data stewardship.

U2 - 10.1093/nar/gkw1032

DO - 10.1093/nar/gkw1032

M3 - Article

C2 - 27899646

SN - 0305-1048

VL - 45

SP - D404-D407

JO - Nucleic acids research

JF - Nucleic acids research

IS - D1

ER -

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research

Abstract

Research Beacons, Institutes and Platforms

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Research output

FAIR Bioinformatics computation and data management: FAIRDOM and the Norwegian Digital Life initiative

Press/Media

THOR Ambassador Newsletter 2017-06

Cite this