FAN: Fingerprint analysis of nucleotide sequences

Neil Maudling; Teresa K. Attwood

doi:10.1093/nar/gkh457

FAN: Fingerprint analysis of nucleotide sequences

Research output: Contribution to journal › Article › peer-review

Abstract

FAN is a server for fingerprint analysis of nucleotide sequences. The server performs a search of submitted nucleotide sequences against the PRINTS database. Searches are performed directly against fingerprints using a codon position specific score matrix (PSSM) approach. The advantages of this approach are increased specificity for coding sequence (CDS) over non-CDS, and increased tolerance to base-substituting and frameshifting sequence errors. Furthermore, there is no need for prior translation of the nucleotide sequences. A web-based interface to the software is available at http://bioinf.man.ac.uk/cgi-bin/neil/ntfront.pl. © Oxford University Press 2004; all rights reserved.

Original language	English
Pages (from-to)	W620-W623
Journal	Nucleic acids research.
Volume	32
DOIs	https://doi.org/10.1093/nar/gkh457
Publication status	Published - 1 Jul 2004

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10.1093/nar/gkh457

Cite this

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title = "FAN: Fingerprint analysis of nucleotide sequences",

abstract = "FAN is a server for fingerprint analysis of nucleotide sequences. The server performs a search of submitted nucleotide sequences against the PRINTS database. Searches are performed directly against fingerprints using a codon position specific score matrix (PSSM) approach. The advantages of this approach are increased specificity for coding sequence (CDS) over non-CDS, and increased tolerance to base-substituting and frameshifting sequence errors. Furthermore, there is no need for prior translation of the nucleotide sequences. A web-based interface to the software is available at http://bioinf.man.ac.uk/cgi-bin/neil/ntfront.pl. {\textcopyright} Oxford University Press 2004; all rights reserved.",

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AB - FAN is a server for fingerprint analysis of nucleotide sequences. The server performs a search of submitted nucleotide sequences against the PRINTS database. Searches are performed directly against fingerprints using a codon position specific score matrix (PSSM) approach. The advantages of this approach are increased specificity for coding sequence (CDS) over non-CDS, and increased tolerance to base-substituting and frameshifting sequence errors. Furthermore, there is no need for prior translation of the nucleotide sequences. A web-based interface to the software is available at http://bioinf.man.ac.uk/cgi-bin/neil/ntfront.pl. © Oxford University Press 2004; all rights reserved.

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DO - 10.1093/nar/gkh457

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