Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

William C. Nierman; Arnab Pain; Michael Anderson; Jennifer R. Wortman; H. Stanley Kim; J. Arroyo; Matthew Berriman; Keietsu Abe; David Archer; Clara Bermejo; Joan Bennett; Paul Bowyer; Dan Chen; Matthew J. Collins; Richard Coulsen; Robert M. Davies; Paul S Dyer; Mark Farman; Nadia Fedorova; Natalie D Fedorova; Tamara V. Feldblyum; Reinhard Fischer; Nigel Fosker; Audrey Fraser; Jose L. García; Maria J. García; Ariette Goble; Gustavo H. Goldman; Katsuya Gomi; Sam Griffiths-Jones; Ryan Gwilliam; Brian Haas; Hubertus Haas; David Harris; H. Horiuchi; Jiaqi Huang; Sean Humphray; Javier Jiménez; Nancy Keller; Hoda Khouri; Katsuhiko Kitamoto; Tetsuo Kobayashi; Sven Konzack; Resham Kulkarni; Toshitaka Kumagai; Anne Lafton; Jean Paul Latgé; Weixi Li; Angela Lord; Charles Lu; William H. Majoros; Gregory S. May; Bruce L. Miller; Yasmin Mohamoud; Maria Molina; Michel Monod; Isabelle Mouyna; Stephanie Mulligan; Lee Murphy; Susan O'Neil; Ian Paulsen; Miguel A. Peñalva; Mihaela Pertea; Claire Price; Bethan L. Pritchard; Michael A. Quail; Ester Rabbinowitsch; Neil Rawlins; Marie Adele Rajandream; Utz Reichard; Hubert Renauld; Geoffrey Robson; Santiago Rodríguez De Córdoba; Jose M. Rodríguez-Peña; Catherine M. Ronning; Simon Rutter; Steven L. Salzberg; Miguel Sanchez; Juan C. Sánchez-Ferrero; David Saunders; Kathy Seeger; Rob Squares; Steven Squares; Michio Takeuchi; Fredj Tekaia; Geoffrey Turner; Carlos R. Vazquez De Aldana; Janice Weidman; Owen White; John Woodward; Jae Hyuk Yu; Claire Fraser; James E. Galagan; Kiyoshi Asai; Masayuki Machida; Neil Hall; Bart Barrell; David Denning

doi:10.1038/nature04332

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

William C. Nierman, Arnab Pain, Michael Anderson, Jennifer R. Wortman, H. Stanley Kim, J. Arroyo, Matthew Berriman, Keietsu Abe, David Archer, Clara Bermejo, Joan Bennett, Paul Bowyer, Dan Chen, Matthew J. Collins, Richard Coulsen, Robert M. Davies, Paul S Dyer, Mark Farman, Nadia Fedorova, Natalie D FedorovaTamara V. Feldblyum, Reinhard Fischer, Nigel Fosker, Audrey Fraser, Jose L. García, Maria J. García, Ariette Goble, Gustavo H. Goldman, Katsuya Gomi, Sam Griffiths-Jones, Ryan Gwilliam, Brian Haas, Hubertus Haas, David Harris, H. Horiuchi, Jiaqi Huang, Sean Humphray, Javier Jiménez, Nancy Keller, Hoda Khouri, Katsuhiko Kitamoto, Tetsuo Kobayashi, Sven Konzack, Resham Kulkarni, Toshitaka Kumagai, Anne Lafton, Jean Paul Latgé, Weixi Li, Angela Lord, Charles Lu, William H. Majoros, Gregory S. May, Bruce L. Miller, Yasmin Mohamoud, Maria Molina, Michel Monod, Isabelle Mouyna, Stephanie Mulligan, Lee Murphy, Susan O'Neil, Ian Paulsen, Miguel A. Peñalva, Mihaela Pertea, Claire Price, Bethan L. Pritchard, Michael A. Quail, Ester Rabbinowitsch, Neil Rawlins, Marie Adele Rajandream, Utz Reichard, Hubert Renauld, Geoffrey Robson, Santiago Rodríguez De Córdoba, Jose M. Rodríguez-Peña, Catherine M. Ronning, Simon Rutter, Steven L. Salzberg, Miguel Sanchez, Juan C. Sánchez-Ferrero, David Saunders, Kathy Seeger, Rob Squares, Steven Squares, Michio Takeuchi, Fredj Tekaia, Geoffrey Turner, Carlos R. Vazquez De Aldana, Janice Weidman, Owen White, John Woodward, Jae Hyuk Yu, Claire Fraser, James E. Galagan, Kiyoshi Asai, Masayuki Machida, Neil Hall, Bart Barrell, David Denning

Research output: Contribution to journal › Article › peer-review

Abstract

Aspergillus fumigatus is exceptional among microorganisms in being both a primary and opportunistic pathogen as well as a major allergen1-3. Its conidia production is prolific, and so human respiratory tract exposure is almost constant4. A. fumigatus is isolated from human habitats 5 and vegetable compost heaps6,7. In immunocompromised individuals, the incidence of invasive infection can be as high as 50% and the mortality rate is often about 50% (ref. 2). The interaction of A. fumigatus and other airborne fungi with the immune system is increasingly linked to severe asthma and sinusitis8. Although the burden of invasive disease caused by A. fumigatus is substantial, the basic biology of the organism is mostly obscure. Here we show the complete 29.4-megabase genome sequence of the clinical isolate Af293, which consists of eight chromosomes containing 9,926 predicted genes. Microarray analysis revealed temperature-dependent expression of distinct sets of genes, as well as 700 A. fumigatus genes not present or significantly diverged in the closely related sexual species Neosartorya fischeri, many of which may have roles in the pathogenicity phenotype. The Af293 genome sequence provides an unparalleled resource for the future understanding of this remarkable fungus. © 2005 Nature Publishing Group.

Original language	English
Pages (from-to)	1151-1156
Number of pages	5
Journal	Nature
Volume	438
Issue number	7071
DOIs	https://doi.org/10.1038/nature04332
Publication status	Published - 22 Dec 2005

Keywords

genetics: Allergens
genetics: Aspergillus fumigatus
Gene Expression Profiling
Gene Expression Regulation, Fungal
genetics: Genes, Fungal
Genome, Fungal
Genomics
microbiology: Hypersensitivity
Molecular Sequence Data
Oligonucleotide Array Sequence Analysis
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Sequence Analysis, DNA
Temperature
genetics: Virulence

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Access to Document

10.1038/nature04332

Diagnostics and novel life-saving therapies for aspergillosis
Denning, D. (Participant), Anderson, M. J. (Participant), Moore, C. (Participant), Warn, P. (Participant), Bowyer, P. (Participant), Bromley, M. (Participant), Smith, N. (Participant), Howard, S. (Participant) & Niven, R. (Participant)
Impact: Health impacts

Cite this

Nierman, W. C., Pain, A., Anderson, M., Wortman, J. R., Kim, H. S., Arroyo, J., Berriman, M., Abe, K., Archer, D., Bermejo, C., Bennett, J., Bowyer, P., Chen, D., Collins, M. J., Coulsen, R., Davies, R. M., Dyer, P. S., Farman, M., Fedorova, N., ... Denning, D. (2005). Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature, 438(7071), 1151-1156. https://doi.org/10.1038/nature04332

@article{a660086d94144e1eb5ced5afe85080f4,

title = "Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus",

abstract = "Aspergillus fumigatus is exceptional among microorganisms in being both a primary and opportunistic pathogen as well as a major allergen1-3. Its conidia production is prolific, and so human respiratory tract exposure is almost constant4. A. fumigatus is isolated from human habitats 5 and vegetable compost heaps6,7. In immunocompromised individuals, the incidence of invasive infection can be as high as 50% and the mortality rate is often about 50% (ref. 2). The interaction of A. fumigatus and other airborne fungi with the immune system is increasingly linked to severe asthma and sinusitis8. Although the burden of invasive disease caused by A. fumigatus is substantial, the basic biology of the organism is mostly obscure. Here we show the complete 29.4-megabase genome sequence of the clinical isolate Af293, which consists of eight chromosomes containing 9,926 predicted genes. Microarray analysis revealed temperature-dependent expression of distinct sets of genes, as well as 700 A. fumigatus genes not present or significantly diverged in the closely related sexual species Neosartorya fischeri, many of which may have roles in the pathogenicity phenotype. The Af293 genome sequence provides an unparalleled resource for the future understanding of this remarkable fungus. {\textcopyright} 2005 Nature Publishing Group.",

keywords = "genetics: Allergens, genetics: Aspergillus fumigatus, Gene Expression Profiling, Gene Expression Regulation, Fungal, genetics: Genes, Fungal, Genome, Fungal, Genomics, microbiology: Hypersensitivity, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't, Sequence Analysis, DNA, Temperature, genetics: Virulence",

author = "Nierman, {William C.} and Arnab Pain and Michael Anderson and Wortman, {Jennifer R.} and Kim, {H. Stanley} and J. Arroyo and Matthew Berriman and Keietsu Abe and David Archer and Clara Bermejo and Joan Bennett and Paul Bowyer and Dan Chen and Collins, {Matthew J.} and Richard Coulsen and Davies, {Robert M.} and Dyer, {Paul S} and Mark Farman and Nadia Fedorova and Fedorova, {Natalie D} and Feldblyum, {Tamara V.} and Reinhard Fischer and Nigel Fosker and Audrey Fraser and Garc{\'i}a, {Jose L.} and Garc{\'i}a, {Maria J.} and Ariette Goble and Goldman, {Gustavo H.} and Katsuya Gomi and Sam Griffiths-Jones and Ryan Gwilliam and Brian Haas and Hubertus Haas and David Harris and H. Horiuchi and Jiaqi Huang and Sean Humphray and Javier Jim{\'e}nez and Nancy Keller and Hoda Khouri and Katsuhiko Kitamoto and Tetsuo Kobayashi and Sven Konzack and Resham Kulkarni and Toshitaka Kumagai and Anne Lafton and Latg{\'e}, {Jean Paul} and Weixi Li and Angela Lord and Charles Lu and Majoros, {William H.} and May, {Gregory S.} and Miller, {Bruce L.} and Yasmin Mohamoud and Maria Molina and Michel Monod and Isabelle Mouyna and Stephanie Mulligan and Lee Murphy and Susan O'Neil and Ian Paulsen and Pe{\~n}alva, {Miguel A.} and Mihaela Pertea and Claire Price and Pritchard, {Bethan L.} and Quail, {Michael A.} and Ester Rabbinowitsch and Neil Rawlins and Rajandream, {Marie Adele} and Utz Reichard and Hubert Renauld and Geoffrey Robson and {De C{\'o}rdoba}, {Santiago Rodr{\'i}guez} and Rodr{\'i}guez-Pe{\~n}a, {Jose M.} and Ronning, {Catherine M.} and Simon Rutter and Salzberg, {Steven L.} and Miguel Sanchez and S{\'a}nchez-Ferrero, {Juan C.} and David Saunders and Kathy Seeger and Rob Squares and Steven Squares and Michio Takeuchi and Fredj Tekaia and Geoffrey Turner and {Vazquez De Aldana}, {Carlos R.} and Janice Weidman and Owen White and John Woodward and Yu, {Jae Hyuk} and Claire Fraser and Galagan, {James E.} and Kiyoshi Asai and Masayuki Machida and Neil Hall and Bart Barrell and David Denning",

year = "2005",

month = dec,

day = "22",

doi = "10.1038/nature04332",

language = "English",

volume = "438",

pages = "1151--1156",

journal = "Nature",

issn = "0028-0836",

publisher = "Nature Research",

number = "7071",

}

Nierman, WC, Pain, A, Anderson, M, Wortman, JR, Kim, HS, Arroyo, J, Berriman, M, Abe, K, Archer, D, Bermejo, C, Bennett, J, Bowyer, P, Chen, D, Collins, MJ, Coulsen, R, Davies, RM, Dyer, PS, Farman, M, Fedorova, N, Fedorova, ND, Feldblyum, TV, Fischer, R, Fosker, N, Fraser, A, García, JL, García, MJ, Goble, A, Goldman, GH, Gomi, K, Griffiths-Jones, S, Gwilliam, R, Haas, B, Haas, H, Harris, D, Horiuchi, H, Huang, J, Humphray, S, Jiménez, J, Keller, N, Khouri, H, Kitamoto, K, Kobayashi, T, Konzack, S, Kulkarni, R, Kumagai, T, Lafton, A, Latgé, JP, Li, W, Lord, A, Lu, C, Majoros, WH, May, GS, Miller, BL, Mohamoud, Y, Molina, M, Monod, M, Mouyna, I, Mulligan, S, Murphy, L, O'Neil, S, Paulsen, I, Peñalva, MA, Pertea, M, Price, C, Pritchard, BL, Quail, MA, Rabbinowitsch, E, Rawlins, N, Rajandream, MA, Reichard, U, Renauld, H, Robson, G, De Córdoba, SR, Rodríguez-Peña, JM, Ronning, CM, Rutter, S, Salzberg, SL, Sanchez, M, Sánchez-Ferrero, JC, Saunders, D, Seeger, K, Squares, R, Squares, S, Takeuchi, M, Tekaia, F, Turner, G, Vazquez De Aldana, CR, Weidman, J, White, O, Woodward, J, Yu, JH, Fraser, C, Galagan, JE, Asai, K, Machida, M, Hall, N, Barrell, B & Denning, D 2005, 'Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus', Nature, vol. 438, no. 7071, pp. 1151-1156. https://doi.org/10.1038/nature04332

TY - JOUR

T1 - Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

AU - Nierman, William C.

AU - Pain, Arnab

AU - Anderson, Michael

AU - Wortman, Jennifer R.

AU - Kim, H. Stanley

AU - Arroyo, J.

AU - Berriman, Matthew

AU - Abe, Keietsu

AU - Archer, David

AU - Bermejo, Clara

AU - Bennett, Joan

AU - Bowyer, Paul

AU - Chen, Dan

AU - Collins, Matthew J.

AU - Coulsen, Richard

AU - Davies, Robert M.

AU - Dyer, Paul S

AU - Farman, Mark

AU - Fedorova, Nadia

AU - Fedorova, Natalie D

AU - Feldblyum, Tamara V.

AU - Fischer, Reinhard

AU - Fosker, Nigel

AU - Fraser, Audrey

AU - García, Jose L.

AU - García, Maria J.

AU - Goble, Ariette

AU - Goldman, Gustavo H.

AU - Gomi, Katsuya

AU - Griffiths-Jones, Sam

AU - Gwilliam, Ryan

AU - Haas, Brian

AU - Haas, Hubertus

AU - Harris, David

AU - Horiuchi, H.

AU - Huang, Jiaqi

AU - Humphray, Sean

AU - Jiménez, Javier

AU - Keller, Nancy

AU - Khouri, Hoda

AU - Kitamoto, Katsuhiko

AU - Kobayashi, Tetsuo

AU - Konzack, Sven

AU - Kulkarni, Resham

AU - Kumagai, Toshitaka

AU - Lafton, Anne

AU - Latgé, Jean Paul

AU - Li, Weixi

AU - Lord, Angela

AU - Lu, Charles

AU - Majoros, William H.

AU - May, Gregory S.

AU - Miller, Bruce L.

AU - Mohamoud, Yasmin

AU - Molina, Maria

AU - Monod, Michel

AU - Mouyna, Isabelle

AU - Mulligan, Stephanie

AU - Murphy, Lee

AU - O'Neil, Susan

AU - Paulsen, Ian

AU - Peñalva, Miguel A.

AU - Pertea, Mihaela

AU - Price, Claire

AU - Pritchard, Bethan L.

AU - Quail, Michael A.

AU - Rabbinowitsch, Ester

AU - Rawlins, Neil

AU - Rajandream, Marie Adele

AU - Reichard, Utz

AU - Renauld, Hubert

AU - Robson, Geoffrey

AU - De Córdoba, Santiago Rodríguez

AU - Rodríguez-Peña, Jose M.

AU - Ronning, Catherine M.

AU - Rutter, Simon

AU - Salzberg, Steven L.

AU - Sanchez, Miguel

AU - Sánchez-Ferrero, Juan C.

AU - Saunders, David

AU - Seeger, Kathy

AU - Squares, Rob

AU - Squares, Steven

AU - Takeuchi, Michio

AU - Tekaia, Fredj

AU - Turner, Geoffrey

AU - Vazquez De Aldana, Carlos R.

AU - Weidman, Janice

AU - White, Owen

AU - Woodward, John

AU - Yu, Jae Hyuk

AU - Fraser, Claire

AU - Galagan, James E.

AU - Asai, Kiyoshi

AU - Machida, Masayuki

AU - Hall, Neil

AU - Barrell, Bart

AU - Denning, David

PY - 2005/12/22

Y1 - 2005/12/22

N2 - Aspergillus fumigatus is exceptional among microorganisms in being both a primary and opportunistic pathogen as well as a major allergen1-3. Its conidia production is prolific, and so human respiratory tract exposure is almost constant4. A. fumigatus is isolated from human habitats 5 and vegetable compost heaps6,7. In immunocompromised individuals, the incidence of invasive infection can be as high as 50% and the mortality rate is often about 50% (ref. 2). The interaction of A. fumigatus and other airborne fungi with the immune system is increasingly linked to severe asthma and sinusitis8. Although the burden of invasive disease caused by A. fumigatus is substantial, the basic biology of the organism is mostly obscure. Here we show the complete 29.4-megabase genome sequence of the clinical isolate Af293, which consists of eight chromosomes containing 9,926 predicted genes. Microarray analysis revealed temperature-dependent expression of distinct sets of genes, as well as 700 A. fumigatus genes not present or significantly diverged in the closely related sexual species Neosartorya fischeri, many of which may have roles in the pathogenicity phenotype. The Af293 genome sequence provides an unparalleled resource for the future understanding of this remarkable fungus. © 2005 Nature Publishing Group.

AB - Aspergillus fumigatus is exceptional among microorganisms in being both a primary and opportunistic pathogen as well as a major allergen1-3. Its conidia production is prolific, and so human respiratory tract exposure is almost constant4. A. fumigatus is isolated from human habitats 5 and vegetable compost heaps6,7. In immunocompromised individuals, the incidence of invasive infection can be as high as 50% and the mortality rate is often about 50% (ref. 2). The interaction of A. fumigatus and other airborne fungi with the immune system is increasingly linked to severe asthma and sinusitis8. Although the burden of invasive disease caused by A. fumigatus is substantial, the basic biology of the organism is mostly obscure. Here we show the complete 29.4-megabase genome sequence of the clinical isolate Af293, which consists of eight chromosomes containing 9,926 predicted genes. Microarray analysis revealed temperature-dependent expression of distinct sets of genes, as well as 700 A. fumigatus genes not present or significantly diverged in the closely related sexual species Neosartorya fischeri, many of which may have roles in the pathogenicity phenotype. The Af293 genome sequence provides an unparalleled resource for the future understanding of this remarkable fungus. © 2005 Nature Publishing Group.

KW - genetics: Allergens

KW - genetics: Aspergillus fumigatus

KW - Gene Expression Profiling

KW - Gene Expression Regulation, Fungal

KW - genetics: Genes, Fungal

KW - Genome, Fungal

KW - Genomics

KW - microbiology: Hypersensitivity

KW - Molecular Sequence Data

KW - Oligonucleotide Array Sequence Analysis

KW - Research Support, N.I.H., Extramural

KW - Research Support, Non-U.S. Gov't

KW - Sequence Analysis, DNA

KW - Temperature

KW - genetics: Virulence

U2 - 10.1038/nature04332

DO - 10.1038/nature04332

M3 - Article

SN - 0028-0836

VL - 438

SP - 1151

EP - 1156

JO - Nature

JF - Nature

IS - 7071

ER -

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

Abstract

Keywords

UN SDGs

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Impacts

Diagnostics and novel life-saving therapies for aspergillosis

Cite this