GIMIAS: An open source framework for efficient development of research tools and clinical prototypes

Ignacio Larrabide; Pedro Omedas; Yves Martelli; Xavier Planes; Maarten Nieber; Juan A. Moya; Constantine Butakoff; Rafael Sebastián; Oscar Camara; Mathieu De Craene; Bart H. Bijnens; Alejandro F. Frangi

doi:10.1007/978-3-642-01932-6_45

GIMIAS: An open source framework for efficient development of research tools and clinical prototypes

Ignacio Larrabide^*, Pedro Omedas, Yves Martelli, Xavier Planes, Maarten Nieber, Juan A. Moya, Constantine Butakoff, Rafael Sebastián, Oscar Camara, Mathieu De Craene, Bart H. Bijnens, Alejandro F. Frangi

^*Corresponding author for this work

Research output: Chapter in Book/Conference proceeding › Conference contribution › peer-review

Abstract

GIMIAS is a workflow-oriented environment for addressing advanced biomedical image computing and build personalized computational models, which is extensible through the development of application-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Virtual Physiological Human community while allowing business-friendly technology transfer and commercial product development. This framework has been fully developed in ANSI-C++ on top of well known open source libraries like VTK, ITK and wxWidgets among others. Based on GIMIAS, in this paper is presented a workflow for medical image analysis and simulation of the heart.

Original language	English
Title of host publication	Functional Imaging and Modeling of the Heart - 5th International Conference, FIMH 2009, Proceedings
Pages	417-426
Number of pages	10
DOIs	https://doi.org/10.1007/978-3-642-01932-6_45
Publication status	Published - 2009
Event	5th International Conference on Functional Imaging and Modeling of the Heart, FIMH 2009 - Nice, France Duration: 3 Jun 2009 → 5 Jun 2009

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	5528
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	5th International Conference on Functional Imaging and Modeling of the Heart, FIMH 2009
Country/Territory	France
City	Nice
Period	3/06/09 → 5/06/09

Keywords

Biomedical imaging
Cardiovascular modeling
Open source software
Personalized simulations
Virtual Physiological Human

Access to Document

10.1007/978-3-642-01932-6_45

Cite this

Larrabide, I., Omedas, P., Martelli, Y., Planes, X., Nieber, M., Moya, J. A., Butakoff, C., Sebastián, R., Camara, O., De Craene, M., Bijnens, B. H., & Frangi, A. F. (2009). GIMIAS: An open source framework for efficient development of research tools and clinical prototypes. In Functional Imaging and Modeling of the Heart - 5th International Conference, FIMH 2009, Proceedings (pp. 417-426). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 5528). https://doi.org/10.1007/978-3-642-01932-6_45

Larrabide, Ignacio ; Omedas, Pedro ; Martelli, Yves et al. / GIMIAS : An open source framework for efficient development of research tools and clinical prototypes. Functional Imaging and Modeling of the Heart - 5th International Conference, FIMH 2009, Proceedings. 2009. pp. 417-426 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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title = "GIMIAS: An open source framework for efficient development of research tools and clinical prototypes",

abstract = "GIMIAS is a workflow-oriented environment for addressing advanced biomedical image computing and build personalized computational models, which is extensible through the development of application-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Virtual Physiological Human community while allowing business-friendly technology transfer and commercial product development. This framework has been fully developed in ANSI-C++ on top of well known open source libraries like VTK, ITK and wxWidgets among others. Based on GIMIAS, in this paper is presented a workflow for medical image analysis and simulation of the heart.",

keywords = "Biomedical imaging, Cardiovascular modeling, Open source software, Personalized simulations, Virtual Physiological Human",

author = "Ignacio Larrabide and Pedro Omedas and Yves Martelli and Xavier Planes and Maarten Nieber and Moya, {Juan A.} and Constantine Butakoff and Rafael Sebasti{\'a}n and Oscar Camara and {De Craene}, Mathieu and Bijnens, {Bart H.} and Frangi, {Alejandro F.}",

year = "2009",

doi = "10.1007/978-3-642-01932-6_45",

language = "English",

isbn = "3642019315",

series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",

pages = "417--426",

booktitle = "Functional Imaging and Modeling of the Heart - 5th International Conference, FIMH 2009, Proceedings",

note = "5th International Conference on Functional Imaging and Modeling of the Heart, FIMH 2009 ; Conference date: 03-06-2009 Through 05-06-2009",

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Larrabide, I, Omedas, P, Martelli, Y, Planes, X, Nieber, M, Moya, JA, Butakoff, C, Sebastián, R, Camara, O, De Craene, M, Bijnens, BH & Frangi, AF 2009, GIMIAS: An open source framework for efficient development of research tools and clinical prototypes. in Functional Imaging and Modeling of the Heart - 5th International Conference, FIMH 2009, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 5528, pp. 417-426, 5th International Conference on Functional Imaging and Modeling of the Heart, FIMH 2009, Nice, France, 3/06/09. https://doi.org/10.1007/978-3-642-01932-6_45

GIMIAS: An open source framework for efficient development of research tools and clinical prototypes. / Larrabide, Ignacio; Omedas, Pedro; Martelli, Yves et al.
Functional Imaging and Modeling of the Heart - 5th International Conference, FIMH 2009, Proceedings. 2009. p. 417-426 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 5528).

Research output: Chapter in Book/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - GIMIAS

T2 - 5th International Conference on Functional Imaging and Modeling of the Heart, FIMH 2009

AU - Larrabide, Ignacio

AU - Omedas, Pedro

AU - Martelli, Yves

AU - Planes, Xavier

AU - Nieber, Maarten

AU - Moya, Juan A.

AU - Butakoff, Constantine

AU - Sebastián, Rafael

AU - Camara, Oscar

AU - De Craene, Mathieu

AU - Bijnens, Bart H.

AU - Frangi, Alejandro F.

PY - 2009

Y1 - 2009

N2 - GIMIAS is a workflow-oriented environment for addressing advanced biomedical image computing and build personalized computational models, which is extensible through the development of application-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Virtual Physiological Human community while allowing business-friendly technology transfer and commercial product development. This framework has been fully developed in ANSI-C++ on top of well known open source libraries like VTK, ITK and wxWidgets among others. Based on GIMIAS, in this paper is presented a workflow for medical image analysis and simulation of the heart.

AB - GIMIAS is a workflow-oriented environment for addressing advanced biomedical image computing and build personalized computational models, which is extensible through the development of application-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Virtual Physiological Human community while allowing business-friendly technology transfer and commercial product development. This framework has been fully developed in ANSI-C++ on top of well known open source libraries like VTK, ITK and wxWidgets among others. Based on GIMIAS, in this paper is presented a workflow for medical image analysis and simulation of the heart.

KW - Biomedical imaging

KW - Cardiovascular modeling

KW - Open source software

KW - Personalized simulations

KW - Virtual Physiological Human

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U2 - 10.1007/978-3-642-01932-6_45

DO - 10.1007/978-3-642-01932-6_45

M3 - Conference contribution

AN - SCOPUS:68849083485

SN - 3642019315

SN - 9783642019319

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

SP - 417

EP - 426

BT - Functional Imaging and Modeling of the Heart - 5th International Conference, FIMH 2009, Proceedings

Y2 - 3 June 2009 through 5 June 2009

ER -

Larrabide I, Omedas P, Martelli Y, Planes X, Nieber M, Moya JA et al. GIMIAS: An open source framework for efficient development of research tools and clinical prototypes. In Functional Imaging and Modeling of the Heart - 5th International Conference, FIMH 2009, Proceedings. 2009. p. 417-426. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-642-01932-6_45

GIMIAS: An open source framework for efficient development of research tools and clinical prototypes

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Keywords

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