TY - JOUR
T1 - Graph convolution network with similarity awareness and adaptive calibration for disease-induced deterioration prediction
AU - Song, Xuegang
AU - Zhou, Feng
AU - Frangi, Alejandro F.
AU - Cao, Jiuwen
AU - Xiao, Xiaohua
AU - Lei, Yi
AU - Wang, Tianfu
AU - Lei, Baiying
N1 - Funding Information:
This work was supported partly by China Postdoctoral Science Foundation (Nos. 2019M653014), National Natural Science Foundation of China (Nos. U1902209, U1902209, 61871274, and 61801305), Guangdong Pearl River Talents Plan (2016ZT06S220), Shenzhen Peacock Plan (Nos. KQTD2016053112051497 and KQTD2015033016104926), and Shenzhen Key Basic Research Project (Nos. JCYJ20180507184647636, JCYJ20170818142347251, JCYJ20170818094109846 and JCYJ20170413152804728), Royal Academy of Engineering Chair in Emerging Technologies Scheme (CiET1819/19), Pengcheng Visiting Scholars Programme from the Shenzhen Government.
Publisher Copyright:
© 2020
PY - 2021/4
Y1 - 2021/4
N2 - Graph convolution networks (GCN) have been successfully applied in disease prediction tasks as they capture interactions (i.e., edges and edge weights on the graph) between individual elements. The interactions in existing works are constructed by fusing similarity between imaging information and distance between non-imaging information, whereas disregarding the disease status of those individuals in the training set. Besides, the similarity is being evaluated by computing the correlation distance between feature vectors, which limits prediction performance, especially for predicting significant memory concern (SMC) and mild cognitive impairment (MCI). In this paper, we propose three mechanisms to improve GCN, namely similarity-aware adaptive calibrated GCN (SAC-GCN), for predicting SMC and MCI. First, we design a similarity-aware graph using different receptive fields to consider disease status. The labelled subjects on the graph are only connected with those labelled subjects with the same status. Second, we propose an adaptive mechanism to evaluate similarity. Specifically, we construct initial GCN with evaluating similarity by using traditional correlation distance, then pre-train the initial GCN by using training samples and use it to score all subjects. Then, the difference between these scores replaces correlation distance to update similarity. Last, we devise a calibration mechanism to fuse functional magnetic resonance imaging (fMRI) and diffusion tensor imaging (DTI) information into edges. The proposed method is tested on the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset. Experimental results demonstrate that our proposed method is useful to predict disease-induced deterioration and superior to other related algorithms, with a mean classification accuracy of 86.83% in our prediction tasks.
AB - Graph convolution networks (GCN) have been successfully applied in disease prediction tasks as they capture interactions (i.e., edges and edge weights on the graph) between individual elements. The interactions in existing works are constructed by fusing similarity between imaging information and distance between non-imaging information, whereas disregarding the disease status of those individuals in the training set. Besides, the similarity is being evaluated by computing the correlation distance between feature vectors, which limits prediction performance, especially for predicting significant memory concern (SMC) and mild cognitive impairment (MCI). In this paper, we propose three mechanisms to improve GCN, namely similarity-aware adaptive calibrated GCN (SAC-GCN), for predicting SMC and MCI. First, we design a similarity-aware graph using different receptive fields to consider disease status. The labelled subjects on the graph are only connected with those labelled subjects with the same status. Second, we propose an adaptive mechanism to evaluate similarity. Specifically, we construct initial GCN with evaluating similarity by using traditional correlation distance, then pre-train the initial GCN by using training samples and use it to score all subjects. Then, the difference between these scores replaces correlation distance to update similarity. Last, we devise a calibration mechanism to fuse functional magnetic resonance imaging (fMRI) and diffusion tensor imaging (DTI) information into edges. The proposed method is tested on the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset. Experimental results demonstrate that our proposed method is useful to predict disease-induced deterioration and superior to other related algorithms, with a mean classification accuracy of 86.83% in our prediction tasks.
KW - Adaptive mechanism
KW - Calibration mechanism
KW - Disease prediction
KW - Dual-modal information
KW - Graph convolution network
KW - Similarity awareness
UR - http://www.scopus.com/inward/record.url?scp=85098589063&partnerID=8YFLogxK
U2 - 10.1016/j.media.2020.101947
DO - 10.1016/j.media.2020.101947
M3 - Article
C2 - 33388456
AN - SCOPUS:85098589063
SN - 1361-8415
VL - 69
JO - Medical Image Analysis
JF - Medical Image Analysis
M1 - 101947
ER -