IEEE Standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to Facilitate Communication: IEEE Std 2791-2020

IEEE P2791 BioCompute Working Group (BCOWG); Raja Mazumder; Vahan Simonyan

doi:10.1109/IEEESTD.2020.9094416

IEEE Standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to Facilitate Communication: IEEE Std 2791-2020

IEEE P2791 BioCompute Working Group (BCOWG)
, Raja Mazumder (Editor)
, Vahan Simonyan (Editor)

Information Management

Institute of Electrical and Electronics Engineers, Inc. (IEEE)
George Washington University

Research output: Book/Report › Other report › peer-review

518 Downloads (Pure)

Abstract

A major goal of this standard is to improve communication of bioinformatics protocols and data in order to facilitate bioinformatics workflow related exchange and communication between regulatory agencies, pharmaceutical companies, bioinformatics platform providers and researchers. A detailed communication helps ensure responsibility, reproducibility, verify bioinformatics protocol, track provenance information and promote interoperability. In addition, this standard also defines the assurance program for evaluating and certifying products against those requirements.

Scope:
This standard establishes detailed and structured communication of bioinformatics protocols in order to facilitate bioinformatics workflow related exchange and communication between regulatory agencies, pharmaceutical companies, bioinformatics platform providers and researchers. Detailed communication helps ensure responsibility, verify bioinformatics protocol, track provenance information and promote interoperability.

Purpose:
The standard allows for the cross platform communications of complex computation from inception to manufacturing of medical products and services. Another goal of this standard is to improve efficiency and speed of communication.

Original language	English
Publisher	IEEE
Commissioning body	IEEE SA Standards Board
Number of pages	16
ISBN (Electronic)	9781504464666
ISBN (Print)	9781504464673
DOIs	https://doi.org/10.1109/IEEESTD.2020.9094416
Publication status	Published - 11 May 2020
Event	IEEE P2791 BioCompute Working Group (BCOWG): Standard for Bioinformatics Computations and Analyses Generated by High-Throughput Sequencing (HTS) to Facilitate Communication - Duration: 25 May 2018 → 13 Feb 2020 https://sagroups.ieee.org/2791/

Access to Document

10.1109/IEEESTD.2020.9094416

P2971_D4_draft_for_CRG_vote-2020-11-11Accepted author manuscript, 385 KBLicence: Other
P2971_D4_Dec2018_JGK_Revised_TrackChanges_C_OpenSourceNotice_CRG_07__12032019C_EditorialCorrections_FinalProof, 1.1 MBLicence: Other

https://github.com/biocompute-objects/BCO_Specification/tree/3787b477413723dba89b70c7ae41592a6c18af40/IEEE_DocsLicence: Other

1 Finished
1 Active

eScience Lab
Goble, C. (PI), Soiland-Reyes, S. (PI), Andrabi, M. (Researcher), Stewart, A. (Affiliate), Bacall, F. (Researcher), Chadwick, E. (Researcher), Lowe, D. (Technical team), Nenadic, A. (Affiliate), Owen, S. (Researcher), Reed, P. (Researcher), Hambley, A. (Researcher), Sufi, S. A. (Supervisor), Woolland, O. (Technical team), Del-Pinto, W. (Researcher), Sparks, M. (Affiliate), Seip, O. (Affiliate), Slavin, P. (Researcher), Feizollah, A. (Researcher), Rajasekar, A. (PGR student), Suthar, S. A. R. (PGR student), Banerji, A. (Affiliate), Gray, A. (Affiliate), Jay, C. (Affiliate), Herrerias Azcue, F. (Researcher), Xu, F. (Affiliate), Juty, N. (Researcher), Hughes-Noehrer, L. (Affiliate), Yehudi, Y. (PGR student), Missier, P. (Researcher), Stevens, R. (Affiliate) & Aloqalaa, M. (PGR student)
1/01/15 → …
Project: Research
BioExcel-2 Centre of Excellence for Computational Biomolecular Research
Goble, C. (PI), Soiland-Reyes, S. (Researcher), Long, R. (Researcher), Lowe, D. (Researcher), Woolland, O. (Researcher) & Capes, G. (Researcher)
1/01/19 → 30/06/22
Project: Research

1 Article

Enabling precision medicine via standard communication of HTS provenance, analysis, and results
Alterovitz, G., Dean, D., Goble, C., Crusoe, M. R., Soiland-Reyes, S., Bell, A., Hayes, A., Suresh, A., Purkayastha, A., King, C. H. S., Taylor, D., Johanson, E., Thompson, E. E., Donaldson, E., Morizono, H., Tsang, H., Vora, J. K., Goecks, J., Yao, J. & Almeida, J. S. & 17 others, Keeney, J., Addepalli, K., Krampis, K., Smith, K. M., Guo, L., Walderhaug, M., Schito, M., Ezewudo, M., Guimera, N., Walsh, P., Kahsay, R., Gottipati, S., Rodwell, T. C., Bloom, T., Lai, Y., Simonyan, V. & Mazumder, R., 31 Dec 2018, In: PLoS Biology. 16, 12, 18 p., e3000099.
Research output: Contribution to journal › Article › peer-review

Open Access
21 Downloads (Pure)

1 Membership of committee

IEEE P2791 BioCompute Working Group (BCOWG) (Event)
Soiland-Reyes, S. (Member), Mazumder, R. (Chair), Simonyan, V. (Vice-chair), Keeney, J. (Secretary), Thompson, T. (Non-executive director) & Goble, C. (Member)
25 May 2018 → 13 Feb 2020
Activity: Membership › Membership of committee › Research

Cite this

@book{936de52bac534f0e992777fd7073e88d,

title = "IEEE Standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to Facilitate Communication: IEEE Std 2791-2020",

abstract = "A major goal of this standard is to improve communication of bioinformatics protocols and data in order to facilitate bioinformatics workflow related exchange and communication between regulatory agencies, pharmaceutical companies, bioinformatics platform providers and researchers. A detailed communication helps ensure responsibility, reproducibility, verify bioinformatics protocol, track provenance information and promote interoperability. In addition, this standard also defines the assurance program for evaluating and certifying products against those requirements. Scope: This standard establishes detailed and structured communication of bioinformatics protocols in order to facilitate bioinformatics workflow related exchange and communication between regulatory agencies, pharmaceutical companies, bioinformatics platform providers and researchers. Detailed communication helps ensure responsibility, verify bioinformatics protocol, track provenance information and promote interoperability. Purpose: The standard allows for the cross platform communications of complex computation from inception to manufacturing of medical products and services. Another goal of this standard is to improve efficiency and speed of communication.",

author = "\{IEEE P2791 BioCompute Working Group (BCOWG)\} and Stian Soiland-Reyes and Carole Goble",

editor = "Raja Mazumder and Vahan Simonyan",

note = "IEEE Std 2791-2020. Preprints shows version P2791/D4 after CRG approval, showing changes since public review process of P2791/D3.; IEEE P2791 BioCompute Working Group (BCOWG) : Standard for Bioinformatics Computations and Analyses Generated by High-Throughput Sequencing (HTS) to Facilitate Communication, STDS-2791-WG ; Conference date: 25-05-2018 Through 13-02-2020",

year = "2020",

month = may,

day = "11",

doi = "10.1109/IEEESTD.2020.9094416",

language = "English",

isbn = "9781504464673",

publisher = "IEEE",

address = "United States",

url = "https://sagroups.ieee.org/2791/",

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T2 - IEEE P2791 BioCompute Working Group (BCOWG)

AU - IEEE P2791 BioCompute Working Group (BCOWG)

AU - Soiland-Reyes, Stian

AU - Goble, Carole

A2 - Mazumder, Raja

A2 - Simonyan, Vahan

N1 - IEEE Std 2791-2020. Preprints shows version P2791/D4 after CRG approval, showing changes since public review process of P2791/D3.

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N2 - A major goal of this standard is to improve communication of bioinformatics protocols and data in order to facilitate bioinformatics workflow related exchange and communication between regulatory agencies, pharmaceutical companies, bioinformatics platform providers and researchers. A detailed communication helps ensure responsibility, reproducibility, verify bioinformatics protocol, track provenance information and promote interoperability. In addition, this standard also defines the assurance program for evaluating and certifying products against those requirements. Scope: This standard establishes detailed and structured communication of bioinformatics protocols in order to facilitate bioinformatics workflow related exchange and communication between regulatory agencies, pharmaceutical companies, bioinformatics platform providers and researchers. Detailed communication helps ensure responsibility, verify bioinformatics protocol, track provenance information and promote interoperability. Purpose: The standard allows for the cross platform communications of complex computation from inception to manufacturing of medical products and services. Another goal of this standard is to improve efficiency and speed of communication.

AB - A major goal of this standard is to improve communication of bioinformatics protocols and data in order to facilitate bioinformatics workflow related exchange and communication between regulatory agencies, pharmaceutical companies, bioinformatics platform providers and researchers. A detailed communication helps ensure responsibility, reproducibility, verify bioinformatics protocol, track provenance information and promote interoperability. In addition, this standard also defines the assurance program for evaluating and certifying products against those requirements. Scope: This standard establishes detailed and structured communication of bioinformatics protocols in order to facilitate bioinformatics workflow related exchange and communication between regulatory agencies, pharmaceutical companies, bioinformatics platform providers and researchers. Detailed communication helps ensure responsibility, verify bioinformatics protocol, track provenance information and promote interoperability. Purpose: The standard allows for the cross platform communications of complex computation from inception to manufacturing of medical products and services. Another goal of this standard is to improve efficiency and speed of communication.

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DO - 10.1109/IEEESTD.2020.9094416

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BT - IEEE Standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to Facilitate Communication

PB - IEEE

Y2 - 25 May 2018 through 13 February 2020

ER -

IEEE Standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to Facilitate Communication: IEEE Std 2791-2020

Abstract

Access to Document

Fingerprint

Projects

eScience Lab

BioExcel-2 Centre of Excellence for Computational Biomolecular Research

Research output

Enabling precision medicine via standard communication of HTS provenance, analysis, and results

Activities

IEEE P2791 BioCompute Working Group (BCOWG) (Event)

Cite this