Projects per year
Abstract
Specimen Data Refinery (SDR) is a developing platform for automating transcription of specimens from natural history collections. SDR is based on computational workflows and digital twins using FAIR Digital Objects.
We show our recent experiences with building SDR using the Galaxy workflow system and combining two FDO methodologies with open digital specimens (openDS) and RO-Crate data packaging. We suggest FDO improvements for incremental building of digital objects in computational workflows.
We show our recent experiences with building SDR using the Galaxy workflow system and combining two FDO methodologies with open digital specimens (openDS) and RO-Crate data packaging. We suggest FDO improvements for incremental building of digital objects in computational workflows.
| Original language | English |
|---|---|
| Article number | e94349 |
| Journal | Research Ideas and Outcomes |
| Volume | 8 |
| DOIs | |
| Publication status | Published - 12 Oct 2022 |
| Event | First International Conference on FAIR Digital Objects: Turning the Internet into a meaningful data space - Naturalis Biodiversity Center, Leiden, Netherlands Duration: 26 Oct 2022 → 28 Oct 2022 Conference number: 1 https://www.fdo2022.org/ |
Keywords
- FDO
- research object
- RO-Crate
- computational workflow
- Galax
- openDS
- specimen
- digitization
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Dive into the research topics of 'Incrementally building FAIR Digital Objects with Specimen Data Refinery workflows'. Together they form a unique fingerprint.Projects
- 3 Finished
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EOSC-Life: Providing an open collaborative space for digital biology in Europe
Goble, C., Bacall, F., Owen, S., Soiland-Reyes, S. & Williams, A.
1/03/19 → 31/08/23
Project: Research
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H2020 SYNTHESYS+
Goble, C., Williams, A., Brack, P. & Soiland-Reyes, S.
1/02/19 → 31/01/23
Project: Research
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BioExcel-2 Centre of Excellence for Computational Biomolecular Research
Goble, C., Soiland-Reyes, S., Long, R., Lowe, D., Woolland, O. & Capes, G.
1/01/19 → 30/06/22
Project: Research
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Making Canonical Workflow Building Blocks Interoperable across Workflow Languages
Soiland-Reyes, S., Bayarri, G., Andrio, P., Long, R., Lowe, D., Niewielska, A., Hospital, A. & Groth, P., 1 Apr 2022, In: Data Intelligence. 4, 2, p. 342-357 16 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Packaging research artefacts with RO-Crate
Soiland-Reyes, S., Sefton, P., Crosas, M., Castro, L. J., Coppens, F., Fernández, J. M., Garijo, D., Grüning, B., La Rosa, M., Leo, S., Ó Carragáin, E., Portier, M., Trisovic, A., RO-Crate Community, Groth, P. & Goble, C., 20 Jul 2022, In: Data Science. 5, 2, p. 97-138 42 p.Research output: Contribution to journal › Article › peer-review
Open Access -
The Specimen Data Refinery: A canonical workflow framework and FAIR Digital Object approach to speeding up digital mobilisation of natural science collections
Hardisty, A., Brack, P., Goble, C., Livermore, L., Scott, B., Groom, Q., Owen, S. & Soiland-Reyes, S., 7 Mar 2022, In: Data Intelligence. 4, 2Research output: Contribution to journal › Article › peer-review
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