Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

Dagmar Waltemath; Frank T. Bergmann; Claudine Chaouiya; Tobias Czauderna; Padraig Gleeson; Carole Goble; Martin Golebiewski; Michael Hucka; Nick Juty; Olga Krebs; Nicolas Le Novère; Huaiyu Mi; Ion I. Moraru; Chris J. Myers; David Nickerson; Brett G. Olivier; Nicolas Rodriguez; Falk Schreiber; Lucian Smith; Fengkai Zhang; Eric Bonnet

doi:10.4056/sigs.5279417

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

Dagmar Waltemath^*, Frank T. Bergmann, Claudine Chaouiya, Tobias Czauderna, Padraig Gleeson, Carole Goble, Martin Golebiewski, Michael Hucka, Nick Juty, Olga Krebs, Nicolas Le Novère, Huaiyu Mi, Ion I. Moraru, Chris J. Myers, David Nickerson, Brett G. Olivier, Nicolas Rodriguez, Falk Schreiber, Lucian Smith, Fengkai ZhangEric Bonnet

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

Abstract

The Computational Modeling in Biology Network (COMBINE) is an initiative to coordinate the development of community standards and formats in computational systems biology and related fields. This report summarizes the topics and activities of the fourth edition of the annual COMBINE meeting, held in Paris during September 16-20 2013, and attended by a total of 96 people. This edition pioneered a first day devoted to modeling approaches in biology, which attracted a broad audience of scientists thanks to a panel of renowned speakers. During subsequent days, discussions were held on many subjects including the introduction of new features in the various COMBINE standards, new software tools that use the standards, and outreach efforts. Significant emphasis went into work on extensions of the SBML format, and also into community-building. This year's edition once again demonstrated that the COMBINE community is thriving, and still manages to help coordinate activities between different standards in computational systems biology.

Original language	English
Pages (from-to)	1285-1301
Number of pages	17
Journal	Standards in Genomic Sciences
Volume	9
Issue number	3
DOIs	https://doi.org/10.4056/sigs.5279417
Publication status	Published - 15 Jun 2014

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Waltemath, D., Bergmann, F. T., Chaouiya, C., Czauderna, T., Gleeson, P., Goble, C., Golebiewski, M., Hucka, M., Juty, N., Krebs, O., Le Novère, N., Mi, H., Moraru, I. I., Myers, C. J., Nickerson, D., Olivier, B. G., Rodriguez, N., Schreiber, F., Smith, L., ... Bonnet, E. (2014). Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE). Standards in Genomic Sciences, 9(3), 1285-1301. https://doi.org/10.4056/sigs.5279417

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title = "Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)",

abstract = "The Computational Modeling in Biology Network (COMBINE) is an initiative to coordinate the development of community standards and formats in computational systems biology and related fields. This report summarizes the topics and activities of the fourth edition of the annual COMBINE meeting, held in Paris during September 16-20 2013, and attended by a total of 96 people. This edition pioneered a first day devoted to modeling approaches in biology, which attracted a broad audience of scientists thanks to a panel of renowned speakers. During subsequent days, discussions were held on many subjects including the introduction of new features in the various COMBINE standards, new software tools that use the standards, and outreach efforts. Significant emphasis went into work on extensions of the SBML format, and also into community-building. This year's edition once again demonstrated that the COMBINE community is thriving, and still manages to help coordinate activities between different standards in computational systems biology.",

author = "Dagmar Waltemath and Bergmann, {Frank T.} and Claudine Chaouiya and Tobias Czauderna and Padraig Gleeson and Carole Goble and Martin Golebiewski and Michael Hucka and Nick Juty and Olga Krebs and {Le Nov{\`e}re}, Nicolas and Huaiyu Mi and Moraru, {Ion I.} and Myers, {Chris J.} and David Nickerson and Olivier, {Brett G.} and Nicolas Rodriguez and Falk Schreiber and Lucian Smith and Fengkai Zhang and Eric Bonnet",

year = "2014",

month = jun,

day = "15",

doi = "10.4056/sigs.5279417",

language = "English",

volume = "9",

pages = "1285--1301",

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Waltemath, D, Bergmann, FT, Chaouiya, C, Czauderna, T, Gleeson, P, Goble, C, Golebiewski, M, Hucka, M, Juty, N, Krebs, O, Le Novère, N, Mi, H, Moraru, II, Myers, CJ, Nickerson, D, Olivier, BG, Rodriguez, N, Schreiber, F, Smith, L, Zhang, F & Bonnet, E 2014, 'Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)', Standards in Genomic Sciences, vol. 9, no. 3, pp. 1285-1301. https://doi.org/10.4056/sigs.5279417

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AU - Waltemath, Dagmar

AU - Bergmann, Frank T.

AU - Chaouiya, Claudine

AU - Czauderna, Tobias

AU - Gleeson, Padraig

AU - Goble, Carole

AU - Golebiewski, Martin

AU - Hucka, Michael

AU - Juty, Nick

AU - Krebs, Olga

AU - Le Novère, Nicolas

AU - Mi, Huaiyu

AU - Moraru, Ion I.

AU - Myers, Chris J.

AU - Nickerson, David

AU - Olivier, Brett G.

AU - Rodriguez, Nicolas

AU - Schreiber, Falk

AU - Smith, Lucian

AU - Zhang, Fengkai

AU - Bonnet, Eric

PY - 2014/6/15

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Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

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