Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

Daniel E Neafsey; Robert M Waterhouse; Mohammad R Abai; Sergey S Aganezov; Max A Alekseyev; James E Allen; James Amon; Bruno Arcà; Peter Arensburger; Gleb Artemov; Lauren A Assour; Hamidreza Basseri; Aaron Berlin; Bruce W Birren; Stephanie A Blandin; Andrew I Brockman; Thomas R Burkot; Austin Burt; Clara S Chan; Cedric Chauve; Joanna C Chiu; Mikkel Christensen; Carlo Costantini; Victoria L M Davidson; Elena Deligianni; Tania Dottorini; Vicky Dritsou; Stacey B Gabriel; Wamdaogo M Guelbeogo; Andrew B Hall; Mira V Han; Thaung Hlaing; Daniel S T Hughes; Adam M Jenkins; Xiaofang Jiang; Irwin Jungreis; Evdoxia G Kakani; Maryam Kamali; Petri Kemppainen; Ryan C Kennedy; Ioannis K Kirmitzoglou; Lizette L Koekemoer; Njoroge Laban; Nicholas Langridge; Mara K N Lawniczak; Manolis Lirakis; Neil F Lobo; Ernesto Lowy; Robert M MacCallum; Chunhong Mao; Gareth Maslen; Charles Mbogo; Jenny McCarthy; Kristin Michel; Sara N Mitchell; Wendy Moore; Katherine A Murphy; Anastasia N Naumenko; Tony Nolan; Eva M Novoa; Samantha O'Loughlin; Chioma Oringanje; Mohammad A Oshaghi; Nazzy Pakpour; Philippos A Papathanos; Ashley N Peery; Michael Povelones; Anil Prakash; David P Price; Ashok Rajaraman; Lisa J Reimer; David C Rinker; Antonis Rokas; Tanya L Russell; N'Fale Sagnon; Maria V Sharakhova; Terrance Shea; Felipe A Simão; Frederic Simard; Michel A Slotman; Pradya Somboon; Vladimir Stegniy; Claudio J Struchiner; Gregg W C Thomas; Marta Tojo; Pantelis Topalis; José M C Tubio; Maria F Unger; John Vontas; Catherine Walton; Craig S Wilding; Judith H Willis; Yi-Chieh Wu; Guiyun Yan; Evgeny M Zdobnov; Xiaofan Zhou; Flaminia Catteruccia; George K Christophides; Frank H Collins; Robert S Cornman; Andrea Crisanti; Martin J Donnelly; Scott J Emrich; Michael C Fontaine; William Gelbart; Matthew W Hahn; Immo A Hansen; Paul I Howell; Fotis C Kafatos; Manolis Kellis; Daniel Lawson; Christos Louis; Shirley Luckhart; Marc A T Muskavitch; José M Ribeiro; Michael A Riehle; Igor V Sharakhov; Zhijian Tu; Laurence J Zwiebel; Nora J Besansky

doi:10.1126/science.1258522

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

Daniel E Neafsey
, Robert M Waterhouse
, Mohammad R Abai
, Sergey S Aganezov
, Max A Alekseyev
, James E Allen
, James Amon
, Bruno Arcà
, Peter Arensburger
, Gleb Artemov
, Lauren A Assour
, Hamidreza Basseri
, Aaron Berlin
, Bruce W Birren
, Stephanie A Blandin
, Andrew I Brockman
, Thomas R Burkot
, Austin Burt
, Clara S Chan
, Cedric Chauve

Joanna C Chiu, Mikkel Christensen, Carlo Costantini, Victoria L M Davidson, Elena Deligianni, Tania Dottorini, Vicky Dritsou, Stacey B Gabriel, Wamdaogo M Guelbeogo, Andrew B Hall, Mira V Han, Thaung Hlaing, Daniel S T Hughes, Adam M Jenkins, Xiaofang Jiang, Irwin Jungreis, Evdoxia G Kakani, Maryam Kamali, Petri Kemppainen, Ryan C Kennedy, Ioannis K Kirmitzoglou, Lizette L Koekemoer, Njoroge Laban, Nicholas Langridge, Mara K N Lawniczak, Manolis Lirakis, Neil F Lobo, Ernesto Lowy, Robert M MacCallum, Chunhong Mao, Gareth Maslen, Charles Mbogo, Jenny McCarthy, Kristin Michel, Sara N Mitchell, Wendy Moore, Katherine A Murphy, Anastasia N Naumenko, Tony Nolan, Eva M Novoa, Samantha O'Loughlin, Chioma Oringanje, Mohammad A Oshaghi, Nazzy Pakpour, Philippos A Papathanos, Ashley N Peery, Michael Povelones, Anil Prakash, David P Price, Ashok Rajaraman, Lisa J Reimer, David C Rinker, Antonis Rokas, Tanya L Russell, N'Fale Sagnon, Maria V Sharakhova, Terrance Shea, Felipe A Simão, Frederic Simard, Michel A Slotman, Pradya Somboon, Vladimir Stegniy, Claudio J Struchiner, Gregg W C Thomas, Marta Tojo, Pantelis Topalis, José M C Tubio, Maria F Unger, John Vontas, Catherine Walton, Craig S Wilding, Judith H Willis, Yi-Chieh Wu, Guiyun Yan, Evgeny M Zdobnov, Xiaofan Zhou, Flaminia Catteruccia, George K Christophides, Frank H Collins, Robert S Cornman, Andrea Crisanti, Martin J Donnelly, Scott J Emrich, Michael C Fontaine, William Gelbart, Matthew W Hahn, Immo A Hansen, Paul I Howell, Fotis C Kafatos, Manolis Kellis, Daniel Lawson, Christos Louis, Shirley Luckhart, Marc A T Muskavitch, José M Ribeiro, Michael A Riehle, Igor V Sharakhov, Zhijian Tu, Laurence J Zwiebel, Nora J Besansky

Research output: Contribution to journal › Article › peer-review

Abstract

Variation in vectorial capacity for human malaria among Anopheles mosquito species is determined by many factors, including behavior, immunity, and life history. To investigate the genomic basis of vectorial capacity and explore new avenues for vector control, we sequenced the genomes of 16 anopheline mosquito species from diverse locations spanning ~100 million years of evolution. Comparative analyses show faster rates of gene gain and loss, elevated gene shuffling on the X chromosome, and more intron losses, relative to Drosophila. Some determinants of vectorial capacity, such as chemosensory genes, do not show elevated turnover but instead diversify through protein-sequence changes. This dynamism of anopheline genes and genomes may contribute to their flexible capacity to take advantage of new ecological niches, including adapting to humans as primary hosts.

Original language	English
Article number	1258522
Journal	Science (New York, N.Y.)
Volume	347
Issue number	6217
DOIs	https://doi.org/10.1126/science.1258522
Publication status	Published - 2 Jan 2015

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10.1126/science.1258522

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Neafsey, D. E., Waterhouse, R. M., Abai, M. R., Aganezov, S. S., Alekseyev, M. A., Allen, J. E., Amon, J., Arcà, B., Arensburger, P., Artemov, G., Assour, L. A., Basseri, H., Berlin, A., Birren, B. W., Blandin, S. A., Brockman, A. I., Burkot, T. R., Burt, A., Chan, C. S., ... Besansky, N. J. (2015). Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes. Science (New York, N.Y.), 347(6217), Article 1258522. https://doi.org/10.1126/science.1258522

@article{abc026c38df249c78db1fbb4ef29f7cd,

title = "Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.",

abstract = "Variation in vectorial capacity for human malaria among Anopheles mosquito species is determined by many factors, including behavior, immunity, and life history. To investigate the genomic basis of vectorial capacity and explore new avenues for vector control, we sequenced the genomes of 16 anopheline mosquito species from diverse locations spanning \textasciitilde{}100 million years of evolution. Comparative analyses show faster rates of gene gain and loss, elevated gene shuffling on the X chromosome, and more intron losses, relative to Drosophila. Some determinants of vectorial capacity, such as chemosensory genes, do not show elevated turnover but instead diversify through protein-sequence changes. This dynamism of anopheline genes and genomes may contribute to their flexible capacity to take advantage of new ecological niches, including adapting to humans as primary hosts.",

author = "Neafsey, \{Daniel E\} and Waterhouse, \{Robert M\} and Abai, \{Mohammad R\} and Aganezov, \{Sergey S\} and Alekseyev, \{Max A\} and Allen, \{James E\} and James Amon and Bruno Arc{\`a} and Peter Arensburger and Gleb Artemov and Assour, \{Lauren A\} and Hamidreza Basseri and Aaron Berlin and Birren, \{Bruce W\} and Blandin, \{Stephanie A\} and Brockman, \{Andrew I\} and Burkot, \{Thomas R\} and Austin Burt and Chan, \{Clara S\} and Cedric Chauve and Chiu, \{Joanna C\} and Mikkel Christensen and Carlo Costantini and Davidson, \{Victoria L M\} and Elena Deligianni and Tania Dottorini and Vicky Dritsou and Gabriel, \{Stacey B\} and Guelbeogo, \{Wamdaogo M\} and Hall, \{Andrew B\} and Han, \{Mira V\} and Thaung Hlaing and Hughes, \{Daniel S T\} and Jenkins, \{Adam M\} and Xiaofang Jiang and Irwin Jungreis and Kakani, \{Evdoxia G\} and Maryam Kamali and Petri Kemppainen and Kennedy, \{Ryan C\} and Kirmitzoglou, \{Ioannis K\} and Koekemoer, \{Lizette L\} and Njoroge Laban and Nicholas Langridge and Lawniczak, \{Mara K N\} and Manolis Lirakis and Lobo, \{Neil F\} and Ernesto Lowy and MacCallum, \{Robert M\} and Chunhong Mao and Gareth Maslen and Charles Mbogo and Jenny McCarthy and Kristin Michel and Mitchell, \{Sara N\} and Wendy Moore and Murphy, \{Katherine A\} and Naumenko, \{Anastasia N\} and Tony Nolan and Novoa, \{Eva M\} and Samantha O'Loughlin and Chioma Oringanje and Oshaghi, \{Mohammad A\} and Nazzy Pakpour and Papathanos, \{Philippos A\} and Peery, \{Ashley N\} and Michael Povelones and Anil Prakash and Price, \{David P\} and Ashok Rajaraman and Reimer, \{Lisa J\} and Rinker, \{David C\} and Antonis Rokas and Russell, \{Tanya L\} and N'Fale Sagnon and Sharakhova, \{Maria V\} and Terrance Shea and Sim{\~a}o, \{Felipe A\} and Frederic Simard and Slotman, \{Michel A\} and Pradya Somboon and Vladimir Stegniy and Struchiner, \{Claudio J\} and Thomas, \{Gregg W C\} and Marta Tojo and Pantelis Topalis and Tubio, \{Jos{\'e} M C\} and Unger, \{Maria F\} and John Vontas and Catherine Walton and Wilding, \{Craig S\} and Willis, \{Judith H\} and Yi-Chieh Wu and Guiyun Yan and Zdobnov, \{Evgeny M\} and Xiaofan Zhou and Flaminia Catteruccia and Christophides, \{George K\} and Collins, \{Frank H\} and Cornman, \{Robert S\} and Andrea Crisanti and Donnelly, \{Martin J\} and Emrich, \{Scott J\} and Fontaine, \{Michael C\} and William Gelbart and Hahn, \{Matthew W\} and Hansen, \{Immo A\} and Howell, \{Paul I\} and Kafatos, \{Fotis C\} and Manolis Kellis and Daniel Lawson and Christos Louis and Shirley Luckhart and Muskavitch, \{Marc A T\} and Ribeiro, \{Jos{\'e} M\} and Riehle, \{Michael A\} and Sharakhov, \{Igor V\} and Zhijian Tu and Zwiebel, \{Laurence J\} and Besansky, \{Nora J\}",

note = "R01 AI063508, NIAID NIH HHS, United StatesR01 AI073745, NIAID NIH HHS, United StatesR01 AI076584, NIAID NIH HHS, United StatesR01 AI080799, NIAID NIH HHS, United StatesR01 AI104956, NIAID NIH HHS, United StatesR21 AI101459, NIAID NIH HHS, United StatesR56 AI107263, NIAID NIH HHS, United StatesSC1 AI109055, NIAID NIH HHS, United StatesU19 AI089686, NIAID NIH HHS, United StatesU54 HG003067, NHGRI NIH HHS, United States",

year = "2015",

month = jan,

day = "2",

doi = "10.1126/science.1258522",

language = "English",

volume = "347",

journal = "Science (New York, N.Y.)",

publisher = "American Association for the Advancement of Science (A A A S)",

number = "6217",

}

Neafsey, DE, Waterhouse, RM, Abai, MR, Aganezov, SS, Alekseyev, MA, Allen, JE, Amon, J, Arcà, B, Arensburger, P, Artemov, G, Assour, LA, Basseri, H, Berlin, A, Birren, BW, Blandin, SA, Brockman, AI, Burkot, TR, Burt, A, Chan, CS, Chauve, C, Chiu, JC, Christensen, M, Costantini, C, Davidson, VLM, Deligianni, E, Dottorini, T, Dritsou, V, Gabriel, SB, Guelbeogo, WM, Hall, AB, Han, MV, Hlaing, T, Hughes, DST, Jenkins, AM, Jiang, X, Jungreis, I, Kakani, EG, Kamali, M, Kemppainen, P, Kennedy, RC, Kirmitzoglou, IK, Koekemoer, LL, Laban, N, Langridge, N, Lawniczak, MKN, Lirakis, M, Lobo, NF, Lowy, E, MacCallum, RM, Mao, C, Maslen, G, Mbogo, C, McCarthy, J, Michel, K, Mitchell, SN, Moore, W, Murphy, KA, Naumenko, AN, Nolan, T, Novoa, EM, O'Loughlin, S, Oringanje, C, Oshaghi, MA, Pakpour, N, Papathanos, PA, Peery, AN, Povelones, M, Prakash, A, Price, DP, Rajaraman, A, Reimer, LJ, Rinker, DC, Rokas, A, Russell, TL, Sagnon, NF, Sharakhova, MV, Shea, T, Simão, FA, Simard, F, Slotman, MA, Somboon, P, Stegniy, V, Struchiner, CJ, Thomas, GWC, Tojo, M, Topalis, P, Tubio, JMC, Unger, MF, Vontas, J, Walton, C, Wilding, CS, Willis, JH, Wu, Y-C, Yan, G, Zdobnov, EM, Zhou, X, Catteruccia, F, Christophides, GK, Collins, FH, Cornman, RS, Crisanti, A, Donnelly, MJ, Emrich, SJ, Fontaine, MC, Gelbart, W, Hahn, MW, Hansen, IA, Howell, PI, Kafatos, FC, Kellis, M, Lawson, D, Louis, C, Luckhart, S, Muskavitch, MAT, Ribeiro, JM, Riehle, MA, Sharakhov, IV, Tu, Z, Zwiebel, LJ & Besansky, NJ 2015, 'Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.', Science (New York, N.Y.), vol. 347, no. 6217, 1258522. https://doi.org/10.1126/science.1258522

TY - JOUR

T1 - Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

AU - Neafsey, Daniel E

AU - Waterhouse, Robert M

AU - Abai, Mohammad R

AU - Aganezov, Sergey S

AU - Alekseyev, Max A

AU - Allen, James E

AU - Amon, James

AU - Arcà, Bruno

AU - Arensburger, Peter

AU - Artemov, Gleb

AU - Assour, Lauren A

AU - Basseri, Hamidreza

AU - Berlin, Aaron

AU - Birren, Bruce W

AU - Blandin, Stephanie A

AU - Brockman, Andrew I

AU - Burkot, Thomas R

AU - Burt, Austin

AU - Chan, Clara S

AU - Chauve, Cedric

AU - Chiu, Joanna C

AU - Christensen, Mikkel

AU - Costantini, Carlo

AU - Davidson, Victoria L M

AU - Deligianni, Elena

AU - Dottorini, Tania

AU - Dritsou, Vicky

AU - Gabriel, Stacey B

AU - Guelbeogo, Wamdaogo M

AU - Hall, Andrew B

AU - Han, Mira V

AU - Hlaing, Thaung

AU - Hughes, Daniel S T

AU - Jenkins, Adam M

AU - Jiang, Xiaofang

AU - Jungreis, Irwin

AU - Kakani, Evdoxia G

AU - Kamali, Maryam

AU - Kemppainen, Petri

AU - Kennedy, Ryan C

AU - Kirmitzoglou, Ioannis K

AU - Koekemoer, Lizette L

AU - Laban, Njoroge

AU - Langridge, Nicholas

AU - Lawniczak, Mara K N

AU - Lirakis, Manolis

AU - Lobo, Neil F

AU - Lowy, Ernesto

AU - MacCallum, Robert M

AU - Mao, Chunhong

AU - Maslen, Gareth

AU - Mbogo, Charles

AU - McCarthy, Jenny

AU - Michel, Kristin

AU - Mitchell, Sara N

AU - Moore, Wendy

AU - Murphy, Katherine A

AU - Naumenko, Anastasia N

AU - Nolan, Tony

AU - Novoa, Eva M

AU - O'Loughlin, Samantha

AU - Oringanje, Chioma

AU - Oshaghi, Mohammad A

AU - Pakpour, Nazzy

AU - Papathanos, Philippos A

AU - Peery, Ashley N

AU - Povelones, Michael

AU - Prakash, Anil

AU - Price, David P

AU - Rajaraman, Ashok

AU - Reimer, Lisa J

AU - Rinker, David C

AU - Rokas, Antonis

AU - Russell, Tanya L

AU - Sagnon, N'Fale

AU - Sharakhova, Maria V

AU - Shea, Terrance

AU - Simão, Felipe A

AU - Simard, Frederic

AU - Slotman, Michel A

AU - Somboon, Pradya

AU - Stegniy, Vladimir

AU - Struchiner, Claudio J

AU - Thomas, Gregg W C

AU - Tojo, Marta

AU - Topalis, Pantelis

AU - Tubio, José M C

AU - Unger, Maria F

AU - Vontas, John

AU - Walton, Catherine

AU - Wilding, Craig S

AU - Willis, Judith H

AU - Wu, Yi-Chieh

AU - Yan, Guiyun

AU - Zdobnov, Evgeny M

AU - Zhou, Xiaofan

AU - Catteruccia, Flaminia

AU - Christophides, George K

AU - Collins, Frank H

AU - Cornman, Robert S

AU - Crisanti, Andrea

AU - Donnelly, Martin J

AU - Emrich, Scott J

AU - Fontaine, Michael C

AU - Gelbart, William

AU - Hahn, Matthew W

AU - Hansen, Immo A

AU - Howell, Paul I

AU - Kafatos, Fotis C

AU - Kellis, Manolis

AU - Lawson, Daniel

AU - Louis, Christos

AU - Luckhart, Shirley

AU - Muskavitch, Marc A T

AU - Ribeiro, José M

AU - Riehle, Michael A

AU - Sharakhov, Igor V

AU - Tu, Zhijian

AU - Zwiebel, Laurence J

AU - Besansky, Nora J

N1 - R01 AI063508, NIAID NIH HHS, United StatesR01 AI073745, NIAID NIH HHS, United StatesR01 AI076584, NIAID NIH HHS, United StatesR01 AI080799, NIAID NIH HHS, United StatesR01 AI104956, NIAID NIH HHS, United StatesR21 AI101459, NIAID NIH HHS, United StatesR56 AI107263, NIAID NIH HHS, United StatesSC1 AI109055, NIAID NIH HHS, United StatesU19 AI089686, NIAID NIH HHS, United StatesU54 HG003067, NHGRI NIH HHS, United States

PY - 2015/1/2

Y1 - 2015/1/2

N2 - Variation in vectorial capacity for human malaria among Anopheles mosquito species is determined by many factors, including behavior, immunity, and life history. To investigate the genomic basis of vectorial capacity and explore new avenues for vector control, we sequenced the genomes of 16 anopheline mosquito species from diverse locations spanning ~100 million years of evolution. Comparative analyses show faster rates of gene gain and loss, elevated gene shuffling on the X chromosome, and more intron losses, relative to Drosophila. Some determinants of vectorial capacity, such as chemosensory genes, do not show elevated turnover but instead diversify through protein-sequence changes. This dynamism of anopheline genes and genomes may contribute to their flexible capacity to take advantage of new ecological niches, including adapting to humans as primary hosts.

AB - Variation in vectorial capacity for human malaria among Anopheles mosquito species is determined by many factors, including behavior, immunity, and life history. To investigate the genomic basis of vectorial capacity and explore new avenues for vector control, we sequenced the genomes of 16 anopheline mosquito species from diverse locations spanning ~100 million years of evolution. Comparative analyses show faster rates of gene gain and loss, elevated gene shuffling on the X chromosome, and more intron losses, relative to Drosophila. Some determinants of vectorial capacity, such as chemosensory genes, do not show elevated turnover but instead diversify through protein-sequence changes. This dynamism of anopheline genes and genomes may contribute to their flexible capacity to take advantage of new ecological niches, including adapting to humans as primary hosts.

U2 - 10.1126/science.1258522

DO - 10.1126/science.1258522

M3 - Article

C2 - 25554792

VL - 347

JO - Science (New York, N.Y.)

JF - Science (New York, N.Y.)

IS - 6217

M1 - 1258522

ER -

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

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