New developments in the InterPro database

Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Virginie Buillard; Lorenzo Cerutti; Richard Copley; Emmanuel Courcelle; Ujjwal Das; Louise Daugherty; Mark Dibley; Robert Finn; Wolfgang Fleischmann; Julian Gough; Daniel Haft; Nicolas Hulo; Sarah Hunter; Daniel Kahn; Alexander Kanapin; Anish Kejariwal; Alberto Labarga; Petra S. Langendijk-Genevaux; David Lonsdale; Rodrigo Lopez; Ivica Letunic; Martin Madera; John Maslen; Craig McAnulla; Jennifer McDowall; Jaina Mistry; Alex Mitchell; Anastasia N. Nikolskaya; Sandra Orchard; Christine Orengo; Robert Petryszak; Jeremy D. Selengut; Christian J A Sigrist; Paul D. Thomas; Franck Valentin; Derek Wilson; Cathy H. Wu; Corin Yeats

doi:10.1093/nar/gkl841

New developments in the InterPro database

Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert Finn, Wolfgang Fleischmann, Julian Gough, Daniel Haft, Nicolas Hulo, Sarah HunterDaniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra Orchard, Christine Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J A Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats

Research output: Contribution to journal › Article › peer-review

Abstract

InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since the last publication in this journal. There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files. InterPro has always provided matches to UniProtKB proteins on the website and in the match XML file on the FTP site. Additional matches to proteins in UniParc (UniProt archive) are now available for download in the new match XML files only. The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB. The database is available for text- and sequence-based searches via a webserver (http://www.ebi.ac.uk/ interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/ databases/interpro). The InterProScan search tool is now also available via a web service at http://www.ebi.ac.uk/Tools/webservices/ WSInterProScan.html. © 2007 Oxford University Press.

Original language	English
Pages (from-to)	D224-D228
Journal	Nucleic acids research.
Volume	35
Issue number	1
DOIs	https://doi.org/10.1093/nar/gkl841
Publication status	Published - Jan 2007

Keywords

PROTEIN-STRUCTURE
GENOME
SEQUENCES
FAMILIES
DOMAINS
MODELS

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10.1093/nar/gkl841

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Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Binns, D., Bork, P., Buillard, V., Cerutti, L., Copley, R., Courcelle, E., Das, U., Daugherty, L., Dibley, M., Finn, R., Fleischmann, W., Gough, J., Haft, D., Hulo, N., ... Yeats, C. (2007). New developments in the InterPro database. Nucleic acids research., 35(1), D224-D228. https://doi.org/10.1093/nar/gkl841

@article{2b8519c93ac74b52b1e172e417d10262,

title = "New developments in the InterPro database",

abstract = "InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since the last publication in this journal. There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files. InterPro has always provided matches to UniProtKB proteins on the website and in the match XML file on the FTP site. Additional matches to proteins in UniParc (UniProt archive) are now available for download in the new match XML files only. The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB. The database is available for text- and sequence-based searches via a webserver (http://www.ebi.ac.uk/ interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/ databases/interpro). The InterProScan search tool is now also available via a web service at http://www.ebi.ac.uk/Tools/webservices/ WSInterProScan.html. {\textcopyright} 2007 Oxford University Press.",

keywords = "PROTEIN-STRUCTURE, GENOME, SEQUENCES, FAMILIES, DOMAINS, MODELS",

author = "Mulder, {Nicola J.} and Rolf Apweiler and Attwood, {Teresa K.} and Amos Bairoch and Alex Bateman and David Binns and Peer Bork and Virginie Buillard and Lorenzo Cerutti and Richard Copley and Emmanuel Courcelle and Ujjwal Das and Louise Daugherty and Mark Dibley and Robert Finn and Wolfgang Fleischmann and Julian Gough and Daniel Haft and Nicolas Hulo and Sarah Hunter and Daniel Kahn and Alexander Kanapin and Anish Kejariwal and Alberto Labarga and Langendijk-Genevaux, {Petra S.} and David Lonsdale and Rodrigo Lopez and Ivica Letunic and Martin Madera and John Maslen and Craig McAnulla and Jennifer McDowall and Jaina Mistry and Alex Mitchell and Nikolskaya, {Anastasia N.} and Sandra Orchard and Christine Orengo and Robert Petryszak and Selengut, {Jeremy D.} and Sigrist, {Christian J A} and Thomas, {Paul D.} and Franck Valentin and Derek Wilson and Wu, {Cathy H.} and Corin Yeats",

year = "2007",

month = jan,

doi = "10.1093/nar/gkl841",

language = "English",

volume = "35",

pages = "D224--D228",

journal = "Nucleic acids research.",

issn = "1362-4962",

publisher = "Oxford University Press",

number = "1",

}

Mulder, NJ, Apweiler, R, Attwood, TK, Bairoch, A, Bateman, A, Binns, D, Bork, P, Buillard, V, Cerutti, L, Copley, R, Courcelle, E, Das, U, Daugherty, L, Dibley, M, Finn, R, Fleischmann, W, Gough, J, Haft, D, Hulo, N, Hunter, S, Kahn, D, Kanapin, A, Kejariwal, A, Labarga, A, Langendijk-Genevaux, PS, Lonsdale, D, Lopez, R, Letunic, I, Madera, M, Maslen, J, McAnulla, C, McDowall, J, Mistry, J, Mitchell, A, Nikolskaya, AN, Orchard, S, Orengo, C, Petryszak, R, Selengut, JD, Sigrist, CJA, Thomas, PD, Valentin, F, Wilson, D, Wu, CH & Yeats, C 2007, 'New developments in the InterPro database', Nucleic acids research., vol. 35, no. 1, pp. D224-D228. https://doi.org/10.1093/nar/gkl841

TY - JOUR

T1 - New developments in the InterPro database

AU - Mulder, Nicola J.

AU - Apweiler, Rolf

AU - Attwood, Teresa K.

AU - Bairoch, Amos

AU - Bateman, Alex

AU - Binns, David

AU - Bork, Peer

AU - Buillard, Virginie

AU - Cerutti, Lorenzo

AU - Copley, Richard

AU - Courcelle, Emmanuel

AU - Das, Ujjwal

AU - Daugherty, Louise

AU - Dibley, Mark

AU - Finn, Robert

AU - Fleischmann, Wolfgang

AU - Gough, Julian

AU - Haft, Daniel

AU - Hulo, Nicolas

AU - Hunter, Sarah

AU - Kahn, Daniel

AU - Kanapin, Alexander

AU - Kejariwal, Anish

AU - Labarga, Alberto

AU - Langendijk-Genevaux, Petra S.

AU - Lonsdale, David

AU - Lopez, Rodrigo

AU - Letunic, Ivica

AU - Madera, Martin

AU - Maslen, John

AU - McAnulla, Craig

AU - McDowall, Jennifer

AU - Mistry, Jaina

AU - Mitchell, Alex

AU - Nikolskaya, Anastasia N.

AU - Orchard, Sandra

AU - Orengo, Christine

AU - Petryszak, Robert

AU - Selengut, Jeremy D.

AU - Sigrist, Christian J A

AU - Thomas, Paul D.

AU - Valentin, Franck

AU - Wilson, Derek

AU - Wu, Cathy H.

AU - Yeats, Corin

PY - 2007/1

Y1 - 2007/1

N2 - InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since the last publication in this journal. There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files. InterPro has always provided matches to UniProtKB proteins on the website and in the match XML file on the FTP site. Additional matches to proteins in UniParc (UniProt archive) are now available for download in the new match XML files only. The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB. The database is available for text- and sequence-based searches via a webserver (http://www.ebi.ac.uk/ interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/ databases/interpro). The InterProScan search tool is now also available via a web service at http://www.ebi.ac.uk/Tools/webservices/ WSInterProScan.html. © 2007 Oxford University Press.

AB - InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since the last publication in this journal. There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files. InterPro has always provided matches to UniProtKB proteins on the website and in the match XML file on the FTP site. Additional matches to proteins in UniParc (UniProt archive) are now available for download in the new match XML files only. The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB. The database is available for text- and sequence-based searches via a webserver (http://www.ebi.ac.uk/ interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/ databases/interpro). The InterProScan search tool is now also available via a web service at http://www.ebi.ac.uk/Tools/webservices/ WSInterProScan.html. © 2007 Oxford University Press.

KW - PROTEIN-STRUCTURE

KW - GENOME

KW - SEQUENCES

KW - FAMILIES

KW - DOMAINS

KW - MODELS

U2 - 10.1093/nar/gkl841

DO - 10.1093/nar/gkl841

M3 - Article

SN - 1362-4962

VL - 35

SP - D224-D228

JO - Nucleic acids research.

JF - Nucleic acids research.

IS - 1

ER -

New developments in the InterPro database

Abstract

Keywords

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