On the use of agents in a BioInformatics grid

Luc Moreau; Simon Miles; Carole Goble; Mark Greenwood; Vijay Dialani; Matthew Addis; Nedim Alpdemir; Rich Cawley; David De Roure; Justin Ferris; Rob Gaizauskas; Kevin Glover; Chris Greenhalgh; Peter Li; Xiaojian Liu; Phillip Lord; Michael Luck; Darren Marvin; Tom Oinn; Norman Paton; Stephen Pettifer; Milena V. Radenkovic; Angus Roberts; Alan Robinson; Tom Rodden; Martin Senger; Nick Sharman; Robert Stevens; Brian Warboys; Anil Wipat; Chris Wroe

doi:10.1109/CCGRID.2003.1199429

On the use of agents in a BioInformatics grid

Luc Moreau, Simon Miles, Carole Goble, Mark Greenwood, Vijay Dialani, Matthew Addis, Nedim Alpdemir, Rich Cawley, David De Roure, Justin Ferris, Rob Gaizauskas, Kevin Glover, Chris Greenhalgh, Peter Li, Xiaojian Liu, Phillip Lord, Michael Luck, Darren Marvin, Tom Oinn, Norman PatonStephen Pettifer, Milena V. Radenkovic, Angus Roberts, Alan Robinson, Tom Rodden, Martin Senger, Nick Sharman, Robert Stevens, Brian Warboys, Anil Wipat, Chris Wroe

Research output: Chapter in Book/Conference proceeding › Conference contribution › peer-review

Abstract

My Grid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows through personalisation, notification of change and publication of experiments. In this paper, we describe the architecture of my Grid and how it will be used by the scientist. We then show how my Grid can benefit from agents technologies. We have identified three key uses of agent technologies in my Grid: user agents, able to customize and personalise data, agent communication languages offering a generic and portable communication medium, and negotiation allowing multiple distributed entities to reach service level agreements. © 2003 IEEE.

Original language	English
Title of host publication	Proceedings - CCGrid 2003: 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid\|Proc. - CCGrid: IEEE/ACM Int. Symp. Cluster Comput. Grid
Pages	653-660
Number of pages	7
DOIs	https://doi.org/10.1109/CCGRID.2003.1199429
Publication status	Published - 2003
Event	3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, CCGrid 2003 - Tokyo Duration: 1 Jul 2003 → … http://dblp.uni-trier.de/db/conf/ccgrid/ccgrid2003.html#VadhiyarD03http://dblp.uni-trier.de/rec/bibtex/conf/ccgrid/VadhiyarD03.xmlhttp://dblp.uni-trier.de/rec/bibtex/conf/ccgrid/VadhiyarD03

Conference

Conference	3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, CCGrid 2003
City	Tokyo
Period	1/07/03 → …
Internet address	http://dblp.uni-trier.de/db/conf/ccgrid/ccgrid2003.html#VadhiyarD03http://dblp.uni-trier.de/rec/bibtex/conf/ccgrid/VadhiyarD03.xmlhttp://dblp.uni-trier.de/rec/bibtex/conf/ccgrid/VadhiyarD03

Keywords

bioinformatics Grid
agents technologies

Access to Document

10.1109/CCGRID.2003.1199429

Cite this

Moreau, L., Miles, S., Goble, C., Greenwood, M., Dialani, V., Addis, M., Alpdemir, N., Cawley, R., De Roure, D., Ferris, J., Gaizauskas, R., Glover, K., Greenhalgh, C., Li, P., Liu, X., Lord, P., Luck, M., Marvin, D., Oinn, T., ... Wroe, C. (2003). On the use of agents in a BioInformatics grid. In Proceedings - CCGrid 2003: 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid|Proc. - CCGrid: IEEE/ACM Int. Symp. Cluster Comput. Grid (pp. 653-660) https://doi.org/10.1109/CCGRID.2003.1199429

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title = "On the use of agents in a BioInformatics grid",

abstract = "My Grid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows through personalisation, notification of change and publication of experiments. In this paper, we describe the architecture of my Grid and how it will be used by the scientist. We then show how my Grid can benefit from agents technologies. We have identified three key uses of agent technologies in my Grid: user agents, able to customize and personalise data, agent communication languages offering a generic and portable communication medium, and negotiation allowing multiple distributed entities to reach service level agreements. {\textcopyright} 2003 IEEE.",

keywords = "bioinformatics Grid, agents technologies",

author = "Luc Moreau and Simon Miles and Carole Goble and Mark Greenwood and Vijay Dialani and Matthew Addis and Nedim Alpdemir and Rich Cawley and {De Roure}, David and Justin Ferris and Rob Gaizauskas and Kevin Glover and Chris Greenhalgh and Peter Li and Xiaojian Liu and Phillip Lord and Michael Luck and Darren Marvin and Tom Oinn and Norman Paton and Stephen Pettifer and Radenkovic, {Milena V.} and Angus Roberts and Alan Robinson and Tom Rodden and Martin Senger and Nick Sharman and Robert Stevens and Brian Warboys and Anil Wipat and Chris Wroe",

year = "2003",

doi = "10.1109/CCGRID.2003.1199429",

language = "English",

isbn = "0769519199",

pages = "653--660",

booktitle = "Proceedings - CCGrid 2003: 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid|Proc. - CCGrid: IEEE/ACM Int. Symp. Cluster Comput. Grid",

note = "3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, CCGrid 2003 ; Conference date: 01-07-2003",

url = "http://dblp.uni-trier.de/db/conf/ccgrid/ccgrid2003.html#VadhiyarD03http://dblp.uni-trier.de/rec/bibtex/conf/ccgrid/VadhiyarD03.xmlhttp://dblp.uni-trier.de/rec/bibtex/conf/ccgrid/VadhiyarD03",

}

Moreau, L, Miles, S, Goble, C, Greenwood, M, Dialani, V, Addis, M, Alpdemir, N, Cawley, R, De Roure, D, Ferris, J, Gaizauskas, R, Glover, K, Greenhalgh, C, Li, P, Liu, X, Lord, P, Luck, M, Marvin, D, Oinn, T, Paton, N, Pettifer, S, Radenkovic, MV, Roberts, A, Robinson, A, Rodden, T, Senger, M, Sharman, N, Stevens, R, Warboys, B, Wipat, A & Wroe, C 2003, On the use of agents in a BioInformatics grid. in Proceedings - CCGrid 2003: 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid|Proc. - CCGrid: IEEE/ACM Int. Symp. Cluster Comput. Grid. pp. 653-660, 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, CCGrid 2003, Tokyo, 1/07/03. https://doi.org/10.1109/CCGRID.2003.1199429

TY - GEN

T1 - On the use of agents in a BioInformatics grid

AU - Moreau, Luc

AU - Miles, Simon

AU - Goble, Carole

AU - Greenwood, Mark

AU - Dialani, Vijay

AU - Addis, Matthew

AU - Alpdemir, Nedim

AU - Cawley, Rich

AU - De Roure, David

AU - Ferris, Justin

AU - Gaizauskas, Rob

AU - Glover, Kevin

AU - Greenhalgh, Chris

AU - Li, Peter

AU - Liu, Xiaojian

AU - Lord, Phillip

AU - Luck, Michael

AU - Marvin, Darren

AU - Oinn, Tom

AU - Paton, Norman

AU - Pettifer, Stephen

AU - Radenkovic, Milena V.

AU - Roberts, Angus

AU - Robinson, Alan

AU - Rodden, Tom

AU - Senger, Martin

AU - Sharman, Nick

AU - Stevens, Robert

AU - Warboys, Brian

AU - Wipat, Anil

AU - Wroe, Chris

PY - 2003

Y1 - 2003

N2 - My Grid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows through personalisation, notification of change and publication of experiments. In this paper, we describe the architecture of my Grid and how it will be used by the scientist. We then show how my Grid can benefit from agents technologies. We have identified three key uses of agent technologies in my Grid: user agents, able to customize and personalise data, agent communication languages offering a generic and portable communication medium, and negotiation allowing multiple distributed entities to reach service level agreements. © 2003 IEEE.

AB - My Grid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to automate the management of such workflows through personalisation, notification of change and publication of experiments. In this paper, we describe the architecture of my Grid and how it will be used by the scientist. We then show how my Grid can benefit from agents technologies. We have identified three key uses of agent technologies in my Grid: user agents, able to customize and personalise data, agent communication languages offering a generic and portable communication medium, and negotiation allowing multiple distributed entities to reach service level agreements. © 2003 IEEE.

KW - bioinformatics Grid

KW - agents technologies

U2 - 10.1109/CCGRID.2003.1199429

DO - 10.1109/CCGRID.2003.1199429

M3 - Conference contribution

SN - 0769519199

SN - 9780769519197

SP - 653

EP - 660

BT - Proceedings - CCGrid 2003: 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid|Proc. - CCGrid: IEEE/ACM Int. Symp. Cluster Comput. Grid

T2 - 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, CCGrid 2003

Y2 - 1 July 2003

ER -

On the use of agents in a BioInformatics grid

Abstract

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Keywords

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