Pfam: clans, web tools and services.

Robert D. Finn; Jaina Mistry; Benjamin Schuster-Böckler; Sam Griffiths-Jones; Volker Hollich; Timo Lassmann; Simon Moxon; Mhairi Marshall; Ajay Khanna; Richard Durbin; Sean R. Eddy; Erik L L Sonnhammer; Alex Bateman

doi:10.1093/nar/gkj149

Pfam: clans, web tools and services.

Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L L Sonnhammer, Alex Bateman

Research output: Contribution to journal › Article › peer-review

Abstract

Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are described in detail, together with the new associated web pages. Improvements to the range of Pfam web tools and the first set of Pfam web services that allow programmatic access to the database and associated tools are also presented. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://pfam.cgb.ki.se/).

Original language	English
Pages (from-to)	D247-251
Journal	Nucleic acids research.
Volume	34
DOIs	https://doi.org/10.1093/nar/gkj149
Publication status	Published - 1 Jan 2006

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title = "Pfam: clans, web tools and services.",

abstract = "Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are described in detail, together with the new associated web pages. Improvements to the range of Pfam web tools and the first set of Pfam web services that allow programmatic access to the database and associated tools are also presented. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://pfam.cgb.ki.se/).",

author = "Finn, {Robert D.} and Jaina Mistry and Benjamin Schuster-B{\"o}ckler and Sam Griffiths-Jones and Volker Hollich and Timo Lassmann and Simon Moxon and Mhairi Marshall and Ajay Khanna and Richard Durbin and Eddy, {Sean R.} and Sonnhammer, {Erik L L} and Alex Bateman",

year = "2006",

month = jan,

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doi = "10.1093/nar/gkj149",

language = "English",

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journal = "Nucleic acids research.",

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TY - JOUR

T1 - Pfam: clans, web tools and services.

AU - Finn, Robert D.

AU - Mistry, Jaina

AU - Schuster-Böckler, Benjamin

AU - Griffiths-Jones, Sam

AU - Hollich, Volker

AU - Lassmann, Timo

AU - Moxon, Simon

AU - Marshall, Mhairi

AU - Khanna, Ajay

AU - Durbin, Richard

AU - Eddy, Sean R.

AU - Sonnhammer, Erik L L

AU - Bateman, Alex

PY - 2006/1/1

Y1 - 2006/1/1

N2 - Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are described in detail, together with the new associated web pages. Improvements to the range of Pfam web tools and the first set of Pfam web services that allow programmatic access to the database and associated tools are also presented. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://pfam.cgb.ki.se/).

AB - Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are described in detail, together with the new associated web pages. Improvements to the range of Pfam web tools and the first set of Pfam web services that allow programmatic access to the database and associated tools are also presented. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://pfam.cgb.ki.se/).

U2 - 10.1093/nar/gkj149

DO - 10.1093/nar/gkj149

M3 - Article

C2 - 16381856

SN - 1362-4962

VL - 34

SP - D247-251

JO - Nucleic acids research.

JF - Nucleic acids research.

ER -

Pfam: clans, web tools and services.

Abstract

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