Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis

Brett M. Tyler; Sucheta Tripathy; Xuemin Zhang; Paramvir Dehal; Rays H Y Jiang; Andrea Aerts; Felipe D. Arredondo; Laura Baxter; Douda Bensasson; Jim L. Beynon; Jarrod Chapman; Cynthia M B Damasceno; Anne E. Dorrance; Daolong Dou; Allan W. Dickerman; Inna L. Dubchak; Matteo Garbelotto; Mark Gijzen; Stuart G. Gordon; Francine Govers; Niklaus J. Grunwald; Wayne Huang; Kelly L. Ivors; Richard W. Jones; Sophien Kamoun; Konstantinos Krampis; Kurt H. Lamour; Mi Kyung Lee; W. Hayes McDonald; Mónica Medina; Harold J G Meijer; Eric K. Nordberg; Donald J. Maclean; Manuel D. Ospina-Giraldo; Paul F. Morris; Vipaporn Phuntumart; Nicholas H. Putnam; Sam Rash; Jocelyn K C Rose; Yasuko Sakihama; Asaf A. Salamov; Alon Savidor; Chantel F. Scheuring; Brian M. Smith; Bruno W S Sobral; Astrid Terry; Trudy A. Torto-Alalibo; Joe Win; Zhanyou Xu; Hongbin Zhang; Igor V. Grigoriev; Daniel S. Rokhsar; Jeffrey L. Boore

doi:10.1126/science.1128796

Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis

Brett M. Tyler
, Sucheta Tripathy
, Xuemin Zhang
, Paramvir Dehal
, Rays H Y Jiang
, Andrea Aerts
, Felipe D. Arredondo
, Laura Baxter
, Douda Bensasson
, Jim L. Beynon
, Jarrod Chapman
, Cynthia M B Damasceno
, Anne E. Dorrance
, Daolong Dou
, Allan W. Dickerman
, Inna L. Dubchak
, Matteo Garbelotto
, Mark Gijzen
, Stuart G. Gordon
, Francine Govers

Niklaus J. Grunwald, Wayne Huang, Kelly L. Ivors, Richard W. Jones, Sophien Kamoun, Konstantinos Krampis, Kurt H. Lamour, Mi Kyung Lee, W. Hayes McDonald, Mónica Medina, Harold J G Meijer, Eric K. Nordberg, Donald J. Maclean, Manuel D. Ospina-Giraldo, Paul F. Morris, Vipaporn Phuntumart, Nicholas H. Putnam, Sam Rash, Jocelyn K C Rose, Yasuko Sakihama, Asaf A. Salamov, Alon Savidor, Chantel F. Scheuring, Brian M. Smith, Bruno W S Sobral, Astrid Terry, Trudy A. Torto-Alalibo, Joe Win, Zhanyou Xu, Hongbin Zhang, Igor V. Grigoriev, Daniel S. Rokhsar, Jeffrey L. Boore

Research output: Contribution to journal › Article › peer-review

Abstract

Draft genome sequences have been determined for the soybean pathogen Phytophthora sojae and the sudden oak death pathogen Phytophthora ramorum. Oömycetes such as these Phytophthora species share the kingdom Stramenopila with photosynthetic algae such as diatoms, and the presence of many Phytophthora genes of probable phototroph origin supports a photosynthetic ancestry for the stramenopiles. Comparison of the two species' genomes reveals a rapid expansion and diversification of many protein families associated with plant infection such as hydrolases, ABC transporters, protein toxins, proteinase inhibitors, and, in particular, a superfamily of 700 proteins with similarity to known oömycete avirulence genes.

Original language	English
Pages (from-to)	1261-1266
Number of pages	5
Journal	Science
Volume	313
Issue number	5791
DOIs	https://doi.org/10.1126/science.1128796
Publication status	Published - 1 Sept 2006

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Tyler, B. M., Tripathy, S., Zhang, X., Dehal, P., Jiang, R. H. Y., Aerts, A., Arredondo, F. D., Baxter, L., Bensasson, D., Beynon, J. L., Chapman, J., Damasceno, C. M. B., Dorrance, A. E., Dou, D., Dickerman, A. W., Dubchak, I. L., Garbelotto, M., Gijzen, M., Gordon, S. G., ... Boore, J. L. (2006). Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science, 313(5791), 1261-1266. https://doi.org/10.1126/science.1128796

@article{613003f5c8274022906b6eca053246c0,

title = "Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis",

abstract = "Draft genome sequences have been determined for the soybean pathogen Phytophthora sojae and the sudden oak death pathogen Phytophthora ramorum. O{\"o}mycetes such as these Phytophthora species share the kingdom Stramenopila with photosynthetic algae such as diatoms, and the presence of many Phytophthora genes of probable phototroph origin supports a photosynthetic ancestry for the stramenopiles. Comparison of the two species' genomes reveals a rapid expansion and diversification of many protein families associated with plant infection such as hydrolases, ABC transporters, protein toxins, proteinase inhibitors, and, in particular, a superfamily of 700 proteins with similarity to known o{\"o}mycete avirulence genes.",

author = "Tyler, \{Brett M.\} and Sucheta Tripathy and Xuemin Zhang and Paramvir Dehal and Jiang, \{Rays H Y\} and Andrea Aerts and Arredondo, \{Felipe D.\} and Laura Baxter and Douda Bensasson and Beynon, \{Jim L.\} and Jarrod Chapman and Damasceno, \{Cynthia M B\} and Dorrance, \{Anne E.\} and Daolong Dou and Dickerman, \{Allan W.\} and Dubchak, \{Inna L.\} and Matteo Garbelotto and Mark Gijzen and Gordon, \{Stuart G.\} and Francine Govers and Grunwald, \{Niklaus J.\} and Wayne Huang and Ivors, \{Kelly L.\} and Jones, \{Richard W.\} and Sophien Kamoun and Konstantinos Krampis and Lamour, \{Kurt H.\} and Lee, \{Mi Kyung\} and McDonald, \{W. Hayes\} and M{\'o}nica Medina and Meijer, \{Harold J G\} and Nordberg, \{Eric K.\} and Maclean, \{Donald J.\} and Ospina-Giraldo, \{Manuel D.\} and Morris, \{Paul F.\} and Vipaporn Phuntumart and Putnam, \{Nicholas H.\} and Sam Rash and Rose, \{Jocelyn K C\} and Yasuko Sakihama and Salamov, \{Asaf A.\} and Alon Savidor and Scheuring, \{Chantel F.\} and Smith, \{Brian M.\} and Sobral, \{Bruno W S\} and Astrid Terry and Torto-Alalibo, \{Trudy A.\} and Joe Win and Zhanyou Xu and Hongbin Zhang and Grigoriev, \{Igor V.\} and Rokhsar, \{Daniel S.\} and Boore, \{Jeffrey L.\}",

year = "2006",

month = sep,

day = "1",

doi = "10.1126/science.1128796",

language = "English",

volume = "313",

pages = "1261--1266",

journal = "Science",

issn = "0036-8075",

publisher = "American Association for the Advancement of Science (A A A S)",

number = "5791",

}

Tyler, BM, Tripathy, S, Zhang, X, Dehal, P, Jiang, RHY, Aerts, A, Arredondo, FD, Baxter, L, Bensasson, D, Beynon, JL, Chapman, J, Damasceno, CMB, Dorrance, AE, Dou, D, Dickerman, AW, Dubchak, IL, Garbelotto, M, Gijzen, M, Gordon, SG, Govers, F, Grunwald, NJ, Huang, W, Ivors, KL, Jones, RW, Kamoun, S, Krampis, K, Lamour, KH, Lee, MK, McDonald, WH, Medina, M, Meijer, HJG, Nordberg, EK, Maclean, DJ, Ospina-Giraldo, MD, Morris, PF, Phuntumart, V, Putnam, NH, Rash, S, Rose, JKC, Sakihama, Y, Salamov, AA, Savidor, A, Scheuring, CF, Smith, BM, Sobral, BWS, Terry, A, Torto-Alalibo, TA, Win, J, Xu, Z, Zhang, H, Grigoriev, IV, Rokhsar, DS & Boore, JL 2006, 'Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis', Science, vol. 313, no. 5791, pp. 1261-1266. https://doi.org/10.1126/science.1128796

TY - JOUR

T1 - Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis

AU - Tyler, Brett M.

AU - Tripathy, Sucheta

AU - Zhang, Xuemin

AU - Dehal, Paramvir

AU - Jiang, Rays H Y

AU - Aerts, Andrea

AU - Arredondo, Felipe D.

AU - Baxter, Laura

AU - Bensasson, Douda

AU - Beynon, Jim L.

AU - Chapman, Jarrod

AU - Damasceno, Cynthia M B

AU - Dorrance, Anne E.

AU - Dou, Daolong

AU - Dickerman, Allan W.

AU - Dubchak, Inna L.

AU - Garbelotto, Matteo

AU - Gijzen, Mark

AU - Gordon, Stuart G.

AU - Govers, Francine

AU - Grunwald, Niklaus J.

AU - Huang, Wayne

AU - Ivors, Kelly L.

AU - Jones, Richard W.

AU - Kamoun, Sophien

AU - Krampis, Konstantinos

AU - Lamour, Kurt H.

AU - Lee, Mi Kyung

AU - McDonald, W. Hayes

AU - Medina, Mónica

AU - Meijer, Harold J G

AU - Nordberg, Eric K.

AU - Maclean, Donald J.

AU - Ospina-Giraldo, Manuel D.

AU - Morris, Paul F.

AU - Phuntumart, Vipaporn

AU - Putnam, Nicholas H.

AU - Rash, Sam

AU - Rose, Jocelyn K C

AU - Sakihama, Yasuko

AU - Salamov, Asaf A.

AU - Savidor, Alon

AU - Scheuring, Chantel F.

AU - Smith, Brian M.

AU - Sobral, Bruno W S

AU - Terry, Astrid

AU - Torto-Alalibo, Trudy A.

AU - Win, Joe

AU - Xu, Zhanyou

AU - Zhang, Hongbin

AU - Grigoriev, Igor V.

AU - Rokhsar, Daniel S.

AU - Boore, Jeffrey L.

PY - 2006/9/1

Y1 - 2006/9/1

N2 - Draft genome sequences have been determined for the soybean pathogen Phytophthora sojae and the sudden oak death pathogen Phytophthora ramorum. Oömycetes such as these Phytophthora species share the kingdom Stramenopila with photosynthetic algae such as diatoms, and the presence of many Phytophthora genes of probable phototroph origin supports a photosynthetic ancestry for the stramenopiles. Comparison of the two species' genomes reveals a rapid expansion and diversification of many protein families associated with plant infection such as hydrolases, ABC transporters, protein toxins, proteinase inhibitors, and, in particular, a superfamily of 700 proteins with similarity to known oömycete avirulence genes.

AB - Draft genome sequences have been determined for the soybean pathogen Phytophthora sojae and the sudden oak death pathogen Phytophthora ramorum. Oömycetes such as these Phytophthora species share the kingdom Stramenopila with photosynthetic algae such as diatoms, and the presence of many Phytophthora genes of probable phototroph origin supports a photosynthetic ancestry for the stramenopiles. Comparison of the two species' genomes reveals a rapid expansion and diversification of many protein families associated with plant infection such as hydrolases, ABC transporters, protein toxins, proteinase inhibitors, and, in particular, a superfamily of 700 proteins with similarity to known oömycete avirulence genes.

U2 - 10.1126/science.1128796

DO - 10.1126/science.1128796

M3 - Article

C2 - 16946064

SN - 0036-8075

VL - 313

SP - 1261

EP - 1266

JO - Science

JF - Science

IS - 5791

ER -

Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis

Abstract

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