Projects per year
Abstract
researchobjects.org is a community project that has developed an approach to describe and package up all resources used as part of an investigation as Research Objects (RO’s).
RO’s - provide two main features; a manifest - a consistent way to provide a well-typed, structured description of the resources used in an investigation; and a ‘bundle’ - a mechanism for packaging up manifests with resources as a single, publishable unit.
RO’s therefore carry the research context of an experiment - data, software, standard operating procedures (SOPs), models etc - and gather together the components of an experiment so that they are findable, accessible, interoperable and reproducible (FAIR).
RO’s combine software and data into an aggregative data structure consisting of well described reconstructable parts.
RO’s have the potential to address a number of challenges pertinent to open research including:
a) supporting interoperability between infrastructures by using ROs as a primary mechanism for exchange and publication b) supporting the evolution of research objects as a living collection, enabling provenance tracking c) providing the ability to pivot research object components (data, software, models) that are not restricted to the traditional publication.
Here we present work towards the development and adoption of ROs:
(i) A series of specifications and conventions, using community standards, for the RO manifest and RO bundles.
(ii) Implementations of Java, Python and Ruby APIs and tooling against those specifications;
(iii) Examples of representations of the RO models in various languages (e.g. JSON-LD, RDF, HTML).
RO’s - provide two main features; a manifest - a consistent way to provide a well-typed, structured description of the resources used in an investigation; and a ‘bundle’ - a mechanism for packaging up manifests with resources as a single, publishable unit.
RO’s therefore carry the research context of an experiment - data, software, standard operating procedures (SOPs), models etc - and gather together the components of an experiment so that they are findable, accessible, interoperable and reproducible (FAIR).
RO’s combine software and data into an aggregative data structure consisting of well described reconstructable parts.
RO’s have the potential to address a number of challenges pertinent to open research including:
a) supporting interoperability between infrastructures by using ROs as a primary mechanism for exchange and publication b) supporting the evolution of research objects as a living collection, enabling provenance tracking c) providing the ability to pivot research object components (data, software, models) that are not restricted to the traditional publication.
Here we present work towards the development and adoption of ROs:
(i) A series of specifications and conventions, using community standards, for the RO manifest and RO bundles.
(ii) Implementations of Java, Python and Ruby APIs and tooling against those specifications;
(iii) Examples of representations of the RO models in various languages (e.g. JSON-LD, RDF, HTML).
Original language | English |
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Number of pages | 1 |
Publication status | Published - 10 Jun 2015 |
Event | Bioinformatics Open Source Conference - ISMB 2015, Dublin, Ireland Duration: 10 Jun 2015 → 11 Jun 2015 Conference number: 2015 http://www.open-bio.org/wiki/BOSC_2015 |
Conference
Conference | Bioinformatics Open Source Conference |
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Abbreviated title | BOSC |
Country/Territory | Ireland |
City | Dublin |
Period | 10/06/15 → 11/06/15 |
Internet address |
Fingerprint
Dive into the research topics of 'Research shared: www.researchobject.org'. Together they form a unique fingerprint.Projects
- 1 Finished
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WF4EVER: Wf4Ever - Advanced Workflow Preservation Technologies for Enhanced Science
Goble, C. (PI), Bechhofer, S. (CoI), Fernandes, A. (CoI), Soiland-Reyes, S. (Researcher) & Belhajjame, K. (Researcher)
1/12/10 → 30/11/13
Project: Research
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Apache Taverna: Sustaining research software at the Apache Software Foundation
Soiland-Reyes, S., Dunlop, I., Williams, A. R. & Apache Taverna Team, 2015.Research output: Contribution to conference › Abstract › peer-review
Open AccessFile -
Structuring research methods and data with the research object model: genomics workflows as a case study
Hettne, K., Dharuri, H., Zhao, J., Wolstencroft, K., Belhajjame, K., Soiland-Reyes, S., Mina, E., Thompson, M., Cruickshank, D., Verdes-Montenegro, L., Garrido, J., de Roure, D., Corcho, O., Klyne, G., van Schouwen, R., 't Hoen, P. A. C., Bechhofer, S., Goble, C. & Roos, M., 2014, In: Journal of Biomedical Semantics. 5, 1, 41 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.
Wolstencroft, K., Haines, R., Fellows, D., Williams, A., Withers, D., Owen, S., Soiland-Reyes, S., Dunlop, I., Nenadic, A., Fisher, P., Bhagat, J., Belhajjame, K., Bacall, F., Hardisty, A., Nieva de la Hidalga, A., Balcazar Vargas, M. P., Sufi, S. & Goble, C., Jul 2013, In: Nucleic acids research.. 41, p. W557-561Research output: Contribution to journal › Article › peer-review
Open AccessFile