Rfam: An RNA family database

Sam Griffiths-Jones; Alex Bateman; Mhairi Marshall; Ajay Khanna; Sean R. Eddy

doi:10.1093/nar/gkg006

Rfam: An RNA family database

Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy

Research output: Contribution to journal › Article › peer-review

Abstract

Rfam is a collection of multiple sequence alignments and covariance models representing non-coding RNA families. Rfam is available on the web in the UK at http://www.sanger.ac.uk/Software/Rfam/ and in the US at http://rfam.wustl.edu/. These websites allow the user to search a query sequence against a library of covariance models, and view multiple sequence alignments and family annotation. The database can also be downloaded in flatfile form and searched locally using the INFERNAL package (http://infernal.wustl.edu/). The first release of Rfam (1.0) contains 25 families, which annotate over 50 000 non-coding RNA genes in the taxonomic divisions of the EMBL nucleotide database.

Original language	English
Pages (from-to)	439-441
Number of pages	2
Journal	Nucleic acids research.
Volume	31
Issue number	1
DOIs	https://doi.org/10.1093/nar/gkg006
Publication status	Published - 1 Jan 2003

Access to Document

10.1093/nar/gkg006

Cite this

@article{0014e28cb11241f3949cc45e7f8b450e,

title = "Rfam: An RNA family database",

abstract = "Rfam is a collection of multiple sequence alignments and covariance models representing non-coding RNA families. Rfam is available on the web in the UK at http://www.sanger.ac.uk/Software/Rfam/ and in the US at http://rfam.wustl.edu/. These websites allow the user to search a query sequence against a library of covariance models, and view multiple sequence alignments and family annotation. The database can also be downloaded in flatfile form and searched locally using the INFERNAL package (http://infernal.wustl.edu/). The first release of Rfam (1.0) contains 25 families, which annotate over 50 000 non-coding RNA genes in the taxonomic divisions of the EMBL nucleotide database.",

author = "Sam Griffiths-Jones and Alex Bateman and Mhairi Marshall and Ajay Khanna and Eddy, {Sean R.}",

year = "2003",

month = jan,

day = "1",

doi = "10.1093/nar/gkg006",

language = "English",

volume = "31",

pages = "439--441",

journal = "Nucleic acids research.",

issn = "1362-4962",

publisher = "Oxford University Press",

number = "1",

}

TY - JOUR

T1 - Rfam: An RNA family database

AU - Griffiths-Jones, Sam

AU - Bateman, Alex

AU - Marshall, Mhairi

AU - Khanna, Ajay

AU - Eddy, Sean R.

PY - 2003/1/1

Y1 - 2003/1/1

N2 - Rfam is a collection of multiple sequence alignments and covariance models representing non-coding RNA families. Rfam is available on the web in the UK at http://www.sanger.ac.uk/Software/Rfam/ and in the US at http://rfam.wustl.edu/. These websites allow the user to search a query sequence against a library of covariance models, and view multiple sequence alignments and family annotation. The database can also be downloaded in flatfile form and searched locally using the INFERNAL package (http://infernal.wustl.edu/). The first release of Rfam (1.0) contains 25 families, which annotate over 50 000 non-coding RNA genes in the taxonomic divisions of the EMBL nucleotide database.

AB - Rfam is a collection of multiple sequence alignments and covariance models representing non-coding RNA families. Rfam is available on the web in the UK at http://www.sanger.ac.uk/Software/Rfam/ and in the US at http://rfam.wustl.edu/. These websites allow the user to search a query sequence against a library of covariance models, and view multiple sequence alignments and family annotation. The database can also be downloaded in flatfile form and searched locally using the INFERNAL package (http://infernal.wustl.edu/). The first release of Rfam (1.0) contains 25 families, which annotate over 50 000 non-coding RNA genes in the taxonomic divisions of the EMBL nucleotide database.

U2 - 10.1093/nar/gkg006

DO - 10.1093/nar/gkg006

M3 - Article

C2 - 12520045

SN - 1362-4962

VL - 31

SP - 439

EP - 441

JO - Nucleic acids research.

JF - Nucleic acids research.

IS - 1

ER -

Rfam: An RNA family database

Abstract

Access to Document

Fingerprint

Cite this