Sequence analysis of a 10 kb fragment of yeast chromosome XI identifies the SMY1 locus and reveals sequences related to a pre-mRNA splicing factor and vacuolar ATPase subunit C plus a number of unidentified open reading frames

C. M. James; M. E. Gent; K. J. Indge; S. G. Oliver

doi:10.1002/yea.320100211

Sequence analysis of a 10 kb fragment of yeast chromosome XI identifies the SMY1 locus and reveals sequences related to a pre-mRNA splicing factor and vacuolar ATPase subunit C plus a number of unidentified open reading frames

C. M. James, M. E. Gent, K. J. Indge, S. G. Oliver

Research output: Contribution to journal › Article › peer-review

Abstract

We report the DNA sequence analysis of a region on the left arm of chromosome XI of Saccharomyces cerevisiae extending over 10 kb. The region contains five open reading frames (ORFs) of greater than 100 amino acids which do not show significant overlap with other ORFs. YKL408 contains a sequence with strong similarity to the RNA helicase pre-mRNA splicing factors PRP2, PRP16 and PRP22 (Burgess et al., 1990; Company et al., 1991; Ruby et al., 1991). YKL409 corresponds to the gene SMY1, the sequence of which was previously reported by Lillie and Brown (1992). YKL410 is identical to ATPase subunit C (Beltran et al., 1992) except for an N-terminal extension. YKL406 and YKL407 show no significant identity with any sequences in the databases searched. The sequence has been entered in the EMBL Data Library under Accession Number X75560.

Original language	English
Pages (from-to)	247-255
Number of pages	8
Journal	Yeast
Volume	10
Issue number	2
DOIs	https://doi.org/10.1002/yea.320100211
Publication status	Published - 1994

Keywords

ATPase subunit C
chromosome XI
Genome sequencing
pre-mRNA splicing factor
Saccharomyces cerevisiae
SMY1

Research Beacons, Institutes and Platforms

Manchester Institute of Biotechnology

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10.1002/yea.320100211

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@article{ffc09e09c6f840eb9d14bc79fd2d8e11,

title = "Sequence analysis of a 10 kb fragment of yeast chromosome XI identifies the SMY1 locus and reveals sequences related to a pre-mRNA splicing factor and vacuolar ATPase subunit C plus a number of unidentified open reading frames",

abstract = "We report the DNA sequence analysis of a region on the left arm of chromosome XI of Saccharomyces cerevisiae extending over 10 kb. The region contains five open reading frames (ORFs) of greater than 100 amino acids which do not show significant overlap with other ORFs. YKL408 contains a sequence with strong similarity to the RNA helicase pre-mRNA splicing factors PRP2, PRP16 and PRP22 (Burgess et al., 1990; Company et al., 1991; Ruby et al., 1991). YKL409 corresponds to the gene SMY1, the sequence of which was previously reported by Lillie and Brown (1992). YKL410 is identical to ATPase subunit C (Beltran et al., 1992) except for an N-terminal extension. YKL406 and YKL407 show no significant identity with any sequences in the databases searched. The sequence has been entered in the EMBL Data Library under Accession Number X75560.",

keywords = "ATPase subunit C, chromosome XI, Genome sequencing, pre-mRNA splicing factor, Saccharomyces cerevisiae, SMY1",

author = "James, {C. M.} and Gent, {M. E.} and Indge, {K. J.} and Oliver, {S. G.}",

year = "1994",

doi = "10.1002/yea.320100211",

language = "English",

volume = "10",

pages = "247--255",

journal = "Yeast",

issn = "1097-0061",

publisher = "John Wiley & Sons Ltd",

number = "2",

}

Sequence analysis of a 10 kb fragment of yeast chromosome XI identifies the SMY1 locus and reveals sequences related to a pre-mRNA splicing factor and vacuolar ATPase subunit C plus a number of unidentified open reading frames. / James, C. M.; Gent, M. E.; Indge, K. J. et al.
In: Yeast, Vol. 10, No. 2, 1994, p. 247-255.

Research output: Contribution to journal › Article › peer-review

TY - JOUR

T1 - Sequence analysis of a 10 kb fragment of yeast chromosome XI identifies the SMY1 locus and reveals sequences related to a pre-mRNA splicing factor and vacuolar ATPase subunit C plus a number of unidentified open reading frames

AU - James, C. M.

AU - Gent, M. E.

AU - Indge, K. J.

AU - Oliver, S. G.

PY - 1994

Y1 - 1994

N2 - We report the DNA sequence analysis of a region on the left arm of chromosome XI of Saccharomyces cerevisiae extending over 10 kb. The region contains five open reading frames (ORFs) of greater than 100 amino acids which do not show significant overlap with other ORFs. YKL408 contains a sequence with strong similarity to the RNA helicase pre-mRNA splicing factors PRP2, PRP16 and PRP22 (Burgess et al., 1990; Company et al., 1991; Ruby et al., 1991). YKL409 corresponds to the gene SMY1, the sequence of which was previously reported by Lillie and Brown (1992). YKL410 is identical to ATPase subunit C (Beltran et al., 1992) except for an N-terminal extension. YKL406 and YKL407 show no significant identity with any sequences in the databases searched. The sequence has been entered in the EMBL Data Library under Accession Number X75560.

AB - We report the DNA sequence analysis of a region on the left arm of chromosome XI of Saccharomyces cerevisiae extending over 10 kb. The region contains five open reading frames (ORFs) of greater than 100 amino acids which do not show significant overlap with other ORFs. YKL408 contains a sequence with strong similarity to the RNA helicase pre-mRNA splicing factors PRP2, PRP16 and PRP22 (Burgess et al., 1990; Company et al., 1991; Ruby et al., 1991). YKL409 corresponds to the gene SMY1, the sequence of which was previously reported by Lillie and Brown (1992). YKL410 is identical to ATPase subunit C (Beltran et al., 1992) except for an N-terminal extension. YKL406 and YKL407 show no significant identity with any sequences in the databases searched. The sequence has been entered in the EMBL Data Library under Accession Number X75560.

KW - ATPase subunit C

KW - chromosome XI

KW - Genome sequencing

KW - pre-mRNA splicing factor

KW - Saccharomyces cerevisiae

KW - SMY1

U2 - 10.1002/yea.320100211

DO - 10.1002/yea.320100211

M3 - Article

C2 - 8203165

SN - 1097-0061

VL - 10

SP - 247

EP - 255

JO - Yeast

JF - Yeast

IS - 2

ER -