Simulation of biochemical networks using COPASI - A complex pathway simulator

Sven Sahle; Ralph Gauges; Jürgen Pahle; Natalia Simus; Ursula Kummer; Stefan Hoops; Christine Lee; Mudita Singhal; Liang Xu; Pedro Mendes

doi:10.1109/WSC.2006.322945

Simulation of biochemical networks using COPASI - A complex pathway simulator

Sven Sahle, Ralph Gauges, Jürgen Pahle, Natalia Simus, Ursula Kummer, Stefan Hoops, Christine Lee, Mudita Singhal, Liang Xu, Pedro Mendes

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

Simulation and modeling is becoming one of the standard approaches to understand complex biochemical processes. Therefore, there is a big need for software tools that allow access to diverse simulation and modeling methods as well as support for the use of these methods. Here, we present a new software tool that is platform independent, user friendly and offers several unique features. In addition, we discuss numerical considerations and support for the switching between simulation methods. © 2006 IEEE.

Original language	English
Title of host publication	Proceedings - Winter Simulation Conference\|Proc. Winter Simul. Conf.
Publisher	Omnipress
Pages	1698-1706
Number of pages	8
ISBN (Print)	1424405017, 9781424405015
DOIs	https://doi.org/10.1109/WSC.2006.322945
Publication status	Published - 2006
Event	2006 Winter Simulation Conference, WSC - Monterey, CA Duration: 1 Jul 2006 → … http://dblp.uni-trier.de/db/conf/wsc/wsc2006.html#SahleGPSKHLSXM06http://dblp.uni-trier.de/rec/bibtex/conf/wsc/SahleGPSKHLSXM06.xmlhttp://dblp.uni-trier.de/rec/bibtex/conf/wsc/SahleGPSKHLSXM06

Conference

Conference	2006 Winter Simulation Conference, WSC
City	Monterey, CA
Period	1/07/06 → …
Internet address	http://dblp.uni-trier.de/db/conf/wsc/wsc2006.html#SahleGPSKHLSXM06http://dblp.uni-trier.de/rec/bibtex/conf/wsc/SahleGPSKHLSXM06.xmlhttp://dblp.uni-trier.de/rec/bibtex/conf/wsc/SahleGPSKHLSXM06

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10.1109/WSC.2006.322945

Cite this

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title = "Simulation of biochemical networks using COPASI - A complex pathway simulator",

abstract = "Simulation and modeling is becoming one of the standard approaches to understand complex biochemical processes. Therefore, there is a big need for software tools that allow access to diverse simulation and modeling methods as well as support for the use of these methods. Here, we present a new software tool that is platform independent, user friendly and offers several unique features. In addition, we discuss numerical considerations and support for the switching between simulation methods. {\textcopyright} 2006 IEEE.",

author = "Sven Sahle and Ralph Gauges and J{\"u}rgen Pahle and Natalia Simus and Ursula Kummer and Stefan Hoops and Christine Lee and Mudita Singhal and Liang Xu and Pedro Mendes",

year = "2006",

doi = "10.1109/WSC.2006.322945",

language = "English",

isbn = "1424405017",

pages = "1698--1706",

booktitle = "Proceedings - Winter Simulation Conference|Proc. Winter Simul. Conf.",

publisher = "Omnipress",

address = "United Kingdom",

note = "2006 Winter Simulation Conference, WSC ; Conference date: 01-07-2006",

url = "http://dblp.uni-trier.de/db/conf/wsc/wsc2006.html#SahleGPSKHLSXM06http://dblp.uni-trier.de/rec/bibtex/conf/wsc/SahleGPSKHLSXM06.xmlhttp://dblp.uni-trier.de/rec/bibtex/conf/wsc/SahleGPSKHLSXM06",

}

Sahle, S, Gauges, R, Pahle, J, Simus, N, Kummer, U, Hoops, S, Lee, C, Singhal, M, Xu, L & Mendes, P 2006, Simulation of biochemical networks using COPASI - A complex pathway simulator. in Proceedings - Winter Simulation Conference|Proc. Winter Simul. Conf.. Omnipress, pp. 1698-1706, 2006 Winter Simulation Conference, WSC, Monterey, CA, 1/07/06. https://doi.org/10.1109/WSC.2006.322945

TY - GEN

T1 - Simulation of biochemical networks using COPASI - A complex pathway simulator

AU - Sahle, Sven

AU - Gauges, Ralph

AU - Pahle, Jürgen

AU - Simus, Natalia

AU - Kummer, Ursula

AU - Hoops, Stefan

AU - Lee, Christine

AU - Singhal, Mudita

AU - Xu, Liang

AU - Mendes, Pedro

PY - 2006

Y1 - 2006

N2 - Simulation and modeling is becoming one of the standard approaches to understand complex biochemical processes. Therefore, there is a big need for software tools that allow access to diverse simulation and modeling methods as well as support for the use of these methods. Here, we present a new software tool that is platform independent, user friendly and offers several unique features. In addition, we discuss numerical considerations and support for the switching between simulation methods. © 2006 IEEE.

AB - Simulation and modeling is becoming one of the standard approaches to understand complex biochemical processes. Therefore, there is a big need for software tools that allow access to diverse simulation and modeling methods as well as support for the use of these methods. Here, we present a new software tool that is platform independent, user friendly and offers several unique features. In addition, we discuss numerical considerations and support for the switching between simulation methods. © 2006 IEEE.

U2 - 10.1109/WSC.2006.322945

DO - 10.1109/WSC.2006.322945

M3 - Conference contribution

SN - 1424405017

SN - 9781424405015

SP - 1698

EP - 1706

BT - Proceedings - Winter Simulation Conference|Proc. Winter Simul. Conf.

PB - Omnipress

T2 - 2006 Winter Simulation Conference, WSC

Y2 - 1 July 2006

ER -

Simulation of biochemical networks using COPASI - A complex pathway simulator

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