Tagging single-nucleotide polymorphisms in candidate oncogenes and susceptibility to ovarian cancer

L. Quaye, H. Song, S. J. Ramus, A. Gentry-Maharaj, E. Høgdall, R. A. DiCioccio, V. McGuire, A. H. Wu, D. J. Van Den Berg, M. C. Pike, E. Wozniak, J. A. Doherty, M. A. Rossing, R. B. Ness, K. B. Moysich, C. Høgdall, J. Blaakaer, D. F. Easton, B. A J Ponder, I. J. JacobsU. Menon, A. S. Whittemore, S. Krüger-Kjaer, C. L. Pearce, P. D P Pharoah, S. A. Gayther

    Research output: Contribution to journalArticlepeer-review


    Low-moderate risk alleles that are relatively common in the population may explain a significant proportion of the excess familial risk of ovarian cancer (OC) not attributed to highly penetrant genes. In this study, we evaluated the risks of OC associated with common germline variants in five oncogenes (BRAF, ERBB2, KRAS, NMI and PIK3CA) known to be involved in OC development. Thirty-four tagging SNPs in these genes were genotyped in ∼1800 invasive OC cases and 3000 controls from population-based studies in Denmark, the United Kingdom and the United States. We found no evidence of disease association for SNPs in BRAF, KRAS, ERBB2 and PIK3CA when OC was considered as a single disease phenotype; but after stratification by histological subtype, we found borderline evidence of association for SNPs in KRAS and BRAF with mucinous OC and in ERBB2 and PIK3CA with endometrioid OC. For NMI, we identified a SNP (rs11683487) that was associated with a decreased risk of OC (unadjusted Pdominant=0.004). We then genotyped rs11683487 in another 1097 cases and 1792 controls from an additional three case-control studies from the United States. The combined odds ratio was 0.89 (95% confidence interval (CI): 0.80-0.99) and remained statistically significant (Pdominant=0.032). We also identified two haplotypes in ERBB2 associated with an increased OC risk (Pglobal=0. 034) and a haplotype in BRAF that had a protective effect (Pglobal=0. 005). In conclusion, these data provide borderline evidence of association for common allelic variation in the NMI with risk of epithelial OC. © 2009 Cancer Research.
    Original languageEnglish
    Pages (from-to)993-1001
    Number of pages8
    JournalBritish Journal of Cancer
    Issue number6
    Publication statusPublished - 24 Mar 2009


    • Association studies
    • Oncogene
    • Polymorphism
    • Risk of ovarian cancer


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