Techniques for analysing pattern formation in populations of stem cells and their progeny

John A. Fozard, Glen R. Kirkham, Lee D K Buttery, John R. King, Oliver E. Jensen, Helen M. Byrne

    Research output: Contribution to journalArticlepeer-review


    Background: To investigate how patterns of cell differentiation are related to underlying intra- and inter-cellular signalling pathways, we use a stochastic individual-based model to simulate pattern formation when stem cells and their progeny are cultured as a monolayer. We assume that the fate of an individual cell is regulated by the signals it receives from neighbouring cells via either diffusive or juxtacrine signalling. We analyse simulated patterns using two different spatial statistical measures that are suited to planar multicellular systems: pair correlation functions (PCFs) and quadrat histograms (QHs).Results: With a diffusive signalling mechanism, pattern size (revealed by PCFs) is determined by both morphogen decay rate and a sensitivity parameter that determines the degree to which morphogen biases differentiation; high sensitivity and slow decay give rise to large-scale patterns. In contrast, with juxtacrine signalling, high sensitivity produces well-defined patterns over shorter lengthscales. QHs are simpler to compute than PCFs and allow us to distinguish between random differentiation at low sensitivities and patterned states generated at higher sensitivities.Conclusions: PCFs and QHs together provide an effective means of characterising emergent patterns of differentiation in planar multicellular aggregates. © 2011 Fozard et al; licensee BioMed Central Ltd.
    Original languageEnglish
    Article number396
    JournalBMC Bioinformatics
    Publication statusPublished - 12 Oct 2011


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