The Open PHACTS Discovery Platform from a network biology perspective

Chris Evelo; Egon L Willighagen; Nick Lynch; Bryn Williams-Jones; Antonis Loizou; Stian Soiland-Reyes; Ryan Miller; Anna Gaulton; George Papadatos; Lee Harland; Carole Goble; Peter Woollard; Gerhard Ecker; Daniela Digles; Stefan Senger

doi:10.7490/f1000research.1112676.1

The Open PHACTS Discovery Platform from a network biology perspective

Chris Evelo, Egon L Willighagen, Nick Lynch, Bryn Williams-Jones, Antonis Loizou, Stian Soiland-Reyes, Ryan Miller, Anna Gaulton, George Papadatos, Lee Harland, Carole Goble, Peter Woollard, Gerhard Ecker, Daniela Digles, Stefan Senger

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Abstract

Open PHACTS started as an Innovative Medicines Initiative (IMI) project in 2011. The objective was to integrate a wide range of pharmacologically related data into a central resource that is described according to standards of the semantic web community. Central to this unification was the development of an API to allow the project partners to build their own custom applications and workstreams. Also central to the Open PHACTS Discovery Platform is the development of identity resolution and identity mapping services and a chemistry resolution service. Over the last year the Open PHACTS Discovery Platform has matured with many exciting improvements and greater sustainability of the platform, improved code, data updates and new data sources.

Original language	English
DOIs	https://doi.org/10.7490/f1000research.1112676.1
Publication status	Published - 22 Jul 2016
Event	Network Biology SIG 2016: ISMB 2016 SIG - ISMB 2016, Orlando, United States Duration: 8 Jul 2016 → … http://nrnb.org/netbiosig/

Workshop

Workshop	Network Biology SIG 2016
Abbreviated title	NetBio
Country/Territory	United States
City	Orlando
Period	8/07/16 → …
Internet address	http://nrnb.org/netbiosig/

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10.7490/f1000research.1112676.1Licence: CC BY

f1000research-130584Final published version, 497 KBLicence: CC BY

Open-PHACTS An open integrated and sustainable chemistry, biology and pharmacology knowledge resource for drug discovery
Goble, C. (PI), Pettifer, S. (CoI), Stevens, R. (CoI), Gray, A. (Researcher), Soiland-Reyes, S. (Researcher) & Brenninkmeijer, C. (Researcher)
1/03/11 → 28/02/14
Project: Research

Cite this

Evelo, C., Willighagen, E. L., Lynch, N., Williams-Jones, B., Loizou, A., Soiland-Reyes, S., Miller, R., Gaulton, A., Papadatos, G., Harland, L., Goble, C., Woollard, P., Ecker, G., Digles, D., & Senger, S. (2016). The Open PHACTS Discovery Platform from a network biology perspective. Poster session presented at Network Biology SIG 2016, Orlando, United States. https://doi.org/10.7490/f1000research.1112676.1

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abstract = "Open PHACTS started as an Innovative Medicines Initiative (IMI) project in 2011. The objective was to integrate a wide range of pharmacologically related data into a central resource that is described according to standards of the semantic web community. Central to this unification was the development of an API to allow the project partners to build their own custom applications and workstreams. Also central to the Open PHACTS Discovery Platform is the development of identity resolution and identity mapping services and a chemistry resolution service. Over the last year the Open PHACTS Discovery Platform has matured with many exciting improvements and greater sustainability of the platform, improved code, data updates and new data sources.",

author = "Chris Evelo and Willighagen, {Egon L} and Nick Lynch and Bryn Williams-Jones and Antonis Loizou and Stian Soiland-Reyes and Ryan Miller and Anna Gaulton and George Papadatos and Lee Harland and Carole Goble and Peter Woollard and Gerhard Ecker and Daniela Digles and Stefan Senger",

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doi = "10.7490/f1000research.1112676.1",

language = "English",

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Evelo, C, Willighagen, EL, Lynch, N, Williams-Jones, B, Loizou, A, Soiland-Reyes, S, Miller, R, Gaulton, A, Papadatos, G, Harland, L, Goble, C, Woollard, P, Ecker, G, Digles, D & Senger, S 2016, 'The Open PHACTS Discovery Platform from a network biology perspective', Network Biology SIG 2016, Orlando, United States, 8/07/16. https://doi.org/10.7490/f1000research.1112676.1

TY - CONF

T1 - The Open PHACTS Discovery Platform from a network biology perspective

AU - Evelo, Chris

AU - Willighagen, Egon L

AU - Lynch, Nick

AU - Williams-Jones, Bryn

AU - Loizou, Antonis

AU - Soiland-Reyes, Stian

AU - Miller, Ryan

AU - Gaulton, Anna

AU - Papadatos, George

AU - Harland, Lee

AU - Goble, Carole

AU - Woollard, Peter

AU - Ecker, Gerhard

AU - Digles, Daniela

AU - Senger, Stefan

PY - 2016/7/22

Y1 - 2016/7/22

N2 - Open PHACTS started as an Innovative Medicines Initiative (IMI) project in 2011. The objective was to integrate a wide range of pharmacologically related data into a central resource that is described according to standards of the semantic web community. Central to this unification was the development of an API to allow the project partners to build their own custom applications and workstreams. Also central to the Open PHACTS Discovery Platform is the development of identity resolution and identity mapping services and a chemistry resolution service. Over the last year the Open PHACTS Discovery Platform has matured with many exciting improvements and greater sustainability of the platform, improved code, data updates and new data sources.

AB - Open PHACTS started as an Innovative Medicines Initiative (IMI) project in 2011. The objective was to integrate a wide range of pharmacologically related data into a central resource that is described according to standards of the semantic web community. Central to this unification was the development of an API to allow the project partners to build their own custom applications and workstreams. Also central to the Open PHACTS Discovery Platform is the development of identity resolution and identity mapping services and a chemistry resolution service. Over the last year the Open PHACTS Discovery Platform has matured with many exciting improvements and greater sustainability of the platform, improved code, data updates and new data sources.

U2 - 10.7490/f1000research.1112676.1

DO - 10.7490/f1000research.1112676.1

M3 - Poster

T2 - Network Biology SIG 2016

Y2 - 8 July 2016

ER -

The Open PHACTS Discovery Platform from a network biology perspective

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Workshop

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Open-PHACTS An open integrated and sustainable chemistry, biology and pharmacology knowledge resource for drug discovery

Cite this