The Pfam protein families database

Alex Bateman; Lachlan Coin; Richard Durbin; Robert D. Finn; Volker Hollich; Sam Griffiths-Jones; Ajay Khanna; Mhairi Marshall; Simon Moxon; Erik L L Sonnhammer; David J. Studholme; Corin Yeats; Sean R. Eddy

doi:10.1093/nar/gkh121

The Pfam protein families database

Alex Bateman, Lachlan Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L L Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy

Research output: Contribution to journal › Article › peer-review

Abstract

Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for searching the Pfam collection locally as well as via the web are described. Other recent innovations include modelling of discontinuous domains allowing Pfam domain definitions to be closer to those found in structure databases. Pfam is available on the web in the UK (http:/www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://Pfam.cgb.ki.se/).

Original language	English
Pages (from-to)	D138-D141
Journal	Nucleic acids research.
Volume	32
DOIs	https://doi.org/10.1093/nar/gkh121
Publication status	Published - 1 Jan 2004

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title = "The Pfam protein families database",

abstract = "Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for searching the Pfam collection locally as well as via the web are described. Other recent innovations include modelling of discontinuous domains allowing Pfam domain definitions to be closer to those found in structure databases. Pfam is available on the web in the UK (http:/www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://Pfam.cgb.ki.se/).",

author = "Alex Bateman and Lachlan Coin and Richard Durbin and Finn, {Robert D.} and Volker Hollich and Sam Griffiths-Jones and Ajay Khanna and Mhairi Marshall and Simon Moxon and Sonnhammer, {Erik L L} and Studholme, {David J.} and Corin Yeats and Eddy, {Sean R.}",

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doi = "10.1093/nar/gkh121",

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T1 - The Pfam protein families database

AU - Bateman, Alex

AU - Coin, Lachlan

AU - Durbin, Richard

AU - Finn, Robert D.

AU - Hollich, Volker

AU - Griffiths-Jones, Sam

AU - Khanna, Ajay

AU - Marshall, Mhairi

AU - Moxon, Simon

AU - Sonnhammer, Erik L L

AU - Studholme, David J.

AU - Yeats, Corin

AU - Eddy, Sean R.

PY - 2004/1/1

Y1 - 2004/1/1

N2 - Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for searching the Pfam collection locally as well as via the web are described. Other recent innovations include modelling of discontinuous domains allowing Pfam domain definitions to be closer to those found in structure databases. Pfam is available on the web in the UK (http:/www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://Pfam.cgb.ki.se/).

AB - Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for searching the Pfam collection locally as well as via the web are described. Other recent innovations include modelling of discontinuous domains allowing Pfam domain definitions to be closer to those found in structure databases. Pfam is available on the web in the UK (http:/www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://Pfam.cgb.ki.se/).

U2 - 10.1093/nar/gkh121

DO - 10.1093/nar/gkh121

M3 - Article

C2 - 14681378

SN - 1362-4962

VL - 32

SP - D138-D141

JO - Nucleic acids research.

JF - Nucleic acids research.

ER -

The Pfam protein families database

Abstract

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