Tracking workflow execution with TavernaProv

Stian Soiland-Reyes; Pinar Alper; Carole Goble

doi:10.5281/zenodo.51314

Tracking workflow execution with TavernaProv

Stian Soiland-Reyes, Pinar Alper, Carole Goble

Information Management

Research output: Contribution to conference › Paper › peer-review

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Abstract

Apache Taverna is a scientific workflow system for combining web services and local tools. Taverna records provenance of workflow runs, intermediate values and user interactions, both as an aid for debugging while designing the workflow, but also as a record for later reproducibility and comparison.

Taverna also records provenance of the evolution of the workflow definition (including a chain of wasDerivedFrom relations), Attributions and annotations; for brevity we here focus on how Taverna's workflow run provenance extends PROV and is embedded with Research Objects.

Original language	English
Number of pages	3
DOIs	https://doi.org/10.5281/zenodo.51314
Publication status	Published - 6 Jun 2016
Event	PROV: Three Tears Later: ProvenanceWeek 2016 - The MITRE Corporation, McLean, Virginia, Washington DC, United States Duration: 6 Jun 2017 → 6 Jun 2017 http://provenanceweek.org/2016/p3yl/

Workshop

Workshop	PROV: Three Tears Later
Abbreviated title	P3YL
Country/Territory	United States
City	Washington DC
Period	6/06/17 → 6/06/17
Internet address	http://provenanceweek.org/2016/p3yl/

Keywords

taverna
workflow
provenance
prov

Access to Document

10.5281/zenodo.51314Licence: CC BY

ProvenanceWeek_2016_paper_86Accepted author manuscript, 82.7 KBLicence: CC BY
Tracking workflow execution with TavernaProvProof, 99.5 KBLicence: CC BY

https://github.com/stain/2016-provweek-tavernaprov/Licence: CC BY
https://cdn.rawgit.com/stain/2016-provweek-tavernaprov/master/2016-provweek-tavernaprov.xhtmlLicence: CC BY
http://provenanceweek.org/2016/p3yl/papers/paper_86.pdfLicence: Unspecified
https://s11.no/2016/provweek-tavernaprov/Licence: CC BY

Cite this

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title = "Tracking workflow execution with TavernaProv",

abstract = "Apache Taverna is a scientific workflow system for combining web services and local tools. Taverna records provenance of workflow runs, intermediate values and user interactions, both as an aid for debugging while designing the workflow, but also as a record for later reproducibility and comparison.Taverna also records provenance of the evolution of the workflow definition (including a chain of wasDerivedFrom relations), Attributions and annotations; for brevity we here focus on how Taverna's workflow run provenance extends PROV and is embedded with Research Objects.",

keywords = "taverna, workflow, provenance, prov",

author = "Stian Soiland-Reyes and Pinar Alper and Carole Goble",

year = "2016",

month = jun,

day = "6",

doi = "10.5281/zenodo.51314",

language = "English",

note = "PROV: Three Tears Later : ProvenanceWeek 2016, P3YL ; Conference date: 06-06-2017 Through 06-06-2017",

url = "http://provenanceweek.org/2016/p3yl/",

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TY - CONF

T1 - Tracking workflow execution with TavernaProv

AU - Soiland-Reyes, Stian

AU - Alper, Pinar

AU - Goble, Carole

PY - 2016/6/6

Y1 - 2016/6/6

N2 - Apache Taverna is a scientific workflow system for combining web services and local tools. Taverna records provenance of workflow runs, intermediate values and user interactions, both as an aid for debugging while designing the workflow, but also as a record for later reproducibility and comparison.Taverna also records provenance of the evolution of the workflow definition (including a chain of wasDerivedFrom relations), Attributions and annotations; for brevity we here focus on how Taverna's workflow run provenance extends PROV and is embedded with Research Objects.

AB - Apache Taverna is a scientific workflow system for combining web services and local tools. Taverna records provenance of workflow runs, intermediate values and user interactions, both as an aid for debugging while designing the workflow, but also as a record for later reproducibility and comparison.Taverna also records provenance of the evolution of the workflow definition (including a chain of wasDerivedFrom relations), Attributions and annotations; for brevity we here focus on how Taverna's workflow run provenance extends PROV and is embedded with Research Objects.

KW - taverna

KW - workflow

KW - provenance

KW - prov

UR - http://provenanceweek.org/2016/p3yl/slides/slide_86.pdf

U2 - 10.5281/zenodo.51314

DO - 10.5281/zenodo.51314

M3 - Paper

T2 - PROV: Three Tears Later

Y2 - 6 June 2017 through 6 June 2017

ER -

Tracking workflow execution with TavernaProv

Abstract

Workshop

Keywords

Access to Document

Other files and links

Fingerprint

WF4EVER: Wf4Ever - Advanced Workflow Preservation Technologies for Enhanced Science

Research Object Bundle 1.0: researchobject.org Specification 05 November 2014

Structuring research methods and data with the research object model: genomics workflows as a case study

A workflow PROV-corpus based on Taverna and Wings

TOWARDS HARNESSING COMPUTATIONAL WORKFLOW PROVENANCE FOR EXPERIMENT REPORTING

Cite this

Tracking workflow execution with TavernaProv

Abstract

Workshop

Keywords

Access to Document

Other files and links

Fingerprint

Projects

WF4EVER: Wf4Ever - Advanced Workflow Preservation Technologies for Enhanced Science

Research output

Research Object Bundle 1.0: researchobject.org Specification 05 November 2014

Structuring research methods and data with the research object model: genomics workflows as a case study

A workflow PROV-corpus based on Taverna and Wings

Student theses

TOWARDS HARNESSING COMPUTATIONAL WORKFLOW PROVENANCE FOR EXPERIMENT REPORTING

Cite this